>retro_ogar_2667
TCACTTAGAGAGGATGTCCTTCAGACTTTGAAGAGGTAGGAGGTGGCTGGGGTGGACCTCTACATCATGAACTTCAATCT
CATCATATCCAGAAAGGACTTTACAGGTAAACTGAAGAACCCTGAGAACTTTCAGTATCCTAAAGAGTCTGTTCTAGCTT
ATAAAGAAGGCCATCTGAGCCTGGACATTGTGGCTAAACAAAAGAATCTGGAAGCTGCAGATTTTGTGATATTTCATTTC
CCATTGCAGTAGATTGGAGTCCCTGCCGTTCTGAAAGCCTAGTTTAAGTGAGTGCTGATGGAGTTTGCATACACATATGG
TGCCATGTATGACAAGGGACCTTTCCGGAATAAGAAGACCATGCTTTCTATCACCACTAGTGGCAGCGGCTCCATGCACT
CTCTTCAGGTTGTCCATGGGGATGTGAATATCATTCTCTGGCCAATTCAG
ORF - retro_ogar_2667 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.51 % |
Parental protein coverage: |
90. % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AMKEAAAEALKKKGWEVAESDLYAMNFNPIISRKDITGKLKNPENFQYPAESVLAYKEGRLSPDIVAEQK |
| ...E.....LK....EVA..DLY.MNFN.IISRKD.TGKLKNPENFQYP.ESVLAYKEG.LS.DIVA.QK |
Retrocopy | SLREDVLQTLKR*--EVAGVDLYIMNFNLIISRKDFTGKLKNPENFQYPKESVLAYKEGHLSLDIVAKQK |
|
Parental | KLEAADLVIFQFPLQWFGVPAILKGWFERVLIGEFAYTYAAMYDKGPFRNKKTVLSITTGGSGSMYSLQG |
| .LEAAD.VIF.FPLQ..GVPA.LK..F..VL..EFAYTY.AMYDKGPFRNKKT.LSITT.GSGSM.SLQ. |
Retrocopy | NLEAADFVIFHFPLQ*IGVPAVLKA*FK*VLM-EFAYTYGAMYDKGPFRNKKTMLSITTSGSGSMHSLQV |
|
Parental | VHGDMNIILWPIQ |
| VHGD.NIILWPIQ |
Retrocopy | VHGDVNIILWPIQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2667 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.