RetrogeneDB ID: retro_ogar_267

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: AAQR03192626.1:1339..2881(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000027149
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000011227
• Aliases: None
• Description: None

Sequence

>retro_ogar_267
ATGGCAGACGATGTTGATACTGAAGCAATGCTTGAGGCTCCTTATAAGACGGATGAGGACAAGTTGAGCAGTGCTAATGG
CCATGGAGAACGTAGCAAAAAGAGAGGGGAAAGCAAGAGCAGAAGTCGTACTGATGAACCAAAGAGAAGCCGAAGGAAGG
AAGGGAAGCGAAGTAGAGATAGAGAAAGGAAAAGGAGCAGAAGCCCTGAAAGGAAGCGAAGTAGAAGCAAAGAAAGGAGA
CGGAGCCGCTCGAGAAGTCGAGATGGCAGATTCAGAGGCCGCTACACAAGTCCTTACTCCAGACCAAAATTTAACAGTGA
CATCCGAGGACAGACTGGGTTGCCTTTGAGAAAAGACAAGAGCCCTGTGCGGGAGCCTATTGATAATCTGACTCCTGAGG
AAAGAGATGCAAGAACAGTTTTCTGCATGCAGCTGGCAGCAAGAATTCGACCAAGGGATTTGGAAGCGTTTTTCTCTACA
GTTGGAAAGGTTCGAGATGTGAGGATGATTTCCGATCGAAATGCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTTGT
TGATGTTAGCTCGGTGCCTCTAGCAATAGGATTAACAGGCCAACGAGTTTTCGGAGTGCCAATCCTAGTACGGGCATCAC
AGGCAGAAAAAAACAGAGCTGCAGCAATGGCAAACAATTTGCAAAAGGGACGTGCCGGCCCCATGCGGCTTTATGTAGGC
TCTTTACACTTGAACATAACTGAAGCTATGCTTCGGGGGATCTTTGAGCCTTTTGGAAGGCTCGAAAGTATCCAGCTTAT
GAAGGACAGTGAAACAGGTCGATCTAAAGGATACGGATTTATTACATTTTCAGACTCAGAATGTGCCAAAAAGGCTTTGG
AACAACTTAATGGATTGGAACTAGCTGGAAGGCCAATGAAAGTTGGTCATGTTACTGAAGGTACTGATGCTTCTACTGCT
AGTTCATTTTTGAACAGCGATGAATTAGAAAGGACTGGAATTGACTTGGGAACAGCTGGTGGTCTTCAATTTATGGCAAG
ACTTGCGGAGGGTACAGGTTTGCAGATTCCACCAGCAGCACAGCAGGCTCTACAAATGAACAGCCCTTTGGCATTTGGTG
CTACGGCAGAATTCTCTTTTCGTCTAGATTTGCTAACAAGACTGTCCCAACAGACCCAAGCTTCAGATTTAGCTGCAGCT
GCCTCTGTCCAGCCACTCGCTACACAATGTTTCCAGCTCTCTAACATGTTTAACCCTCAAACAGAAGAAGTTGGATGGGA
TACAGAGATTAAAGACGATGTGATTGAAGAATGTAATAAACATGGAGGTGTTATTCATATTTACGTTGACAAAAATTCAG
CTCAGGGCAATGTGTATGTGAAGTGCCCGTCAATTGCTGCAGCTGTTGCTGCTGTCAGTGCATTGCATGGCAGGTGGTTT
GCTGGGAAAATGATAACAGCAGCGTATGTACCTCTTCCAACTTACCACAACCTCTTTCCTGATTCTATGACAGCTGCACA
ACTACTGGTTCCAAGTAGACGA

Alignment

ORF - retro_ogar_267 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.11 %
• Parental protein coverage: 76.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS
          R.....P.RKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLE.FFSTVGKVRDVRMISDRN.RRS
Retrocopy RGQTGLPLRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEAFFSTVGKVRDVRMISDRNARRS

Parental  KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQYSERPRWIFLKKGCNKFLIFPKEVEIFSRFFWNH
          KGIAYVEFVDVSSVPLAIGLTGQRV.GVPI.V.ASQ..E..R.........K....P......S......
Retrocopy KGIAYVEFVDVSSVPLAIGLTGQRVFGVPILVRASQ-AEKNRAAAMANNLQKGRAGPMRLYVGSLHLNIT

Parental  SRMYKILFLLLFYIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDA
          ..M....F......ESIQLM.DSETGRSKGYGFITFSDSECAKKALEQLNG.ELAGRPMKVGHVTE.TDA
Retrocopy EAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFITFSDSECAKKALEQLNGLELAGRPMKVGHVTEGTDA

Parental  SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTR
          S.ASSFL.SDELERTGIDLGT.G.LQ.MARLAEGTGLQIPPAAQQALQM...LAFGA.AEFSF..DL.TR
Retrocopy STASSFLNSDELERTGIDLGTAGGLQFMARLAEGTGLQIPPAAQQALQMNSPLAFGATAEFSFRLDLLTR

Parental  LSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG
          LSQQT.AS.LAAAASVQPLATQCFQLSNMFNPQT.EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG
Retrocopy LSQQTQASDLAAAASVQPLATQCFQLSNMFNPQT-EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG

Parental  NVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
          NVYVKCPSIAAA.AAV.ALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA.QLLVPSRR
Retrocopy NVYVKCPSIAAAVAAVSALHGRWFAGKMITAAYVPLPTYHNLFPDSMTAAQLLVPSRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_267 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017535	1 retrocopy	retro_cjac_2199,
Homo sapiens	ENSG00000131051	1 retrocopy	retro_hsap_4679,
Gorilla gorilla	ENSGGOG00000003950	1 retrocopy	retro_ggor_2902,
Myotis lucifugus	ENSMLUG00000003000	1 retrocopy	retro_mluc_1152,
Macaca mulatta	ENSMMUG00000031284	1 retrocopy	retro_mmul_2491,
Mus musculus	ENSMUSG00000027620	3 retrocopies	retro_mmus_1512, retro_mmus_2792, retro_mmus_2793,
Nomascus leucogenys	ENSNLEG00000010350	1 retrocopy	retro_nleu_2170,
Otolemur garnettii	ENSOGAG00000011227	1 retrocopy	retro_ogar_267 ,
Ochotona princeps	ENSOPRG00000002183	2 retrocopies	retro_opri_55, retro_opri_913,
Pongo abelii	ENSPPYG00000010963	1 retrocopy	retro_pabe_3634,