RetrogeneDB ID: retro_ogar_2674

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873646.1:99713..99942(-)
• Located in intron of: ENSOGAG00000002255

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ADIRF
• Ensembl ID: ENSOGAG00000009362
• Aliases: None
• Description: adipogenesis regulatory factor [Source:HGNC Symbol;Acc:24043]

Sequence

>retro_ogar_2674
ATGGCCAACAAGGGCTTGCAACATTTGAAGCAACAGGTGGAGGAGATGGCCGAGGAAGCAGTGACAGTAGCTGGAGCAAC
AGTTCAGCAAGTGCTGGATCAAGCCGCAGAGACTGGGCAGAAAGCCATGGACCAGCTGGCCAGCTCCACCCAGGAAACCA
TCAACAAGACTGCTAGGCAGGTTTCTGACTGCTACTCAGGTTTTGCAAAAAAAATTAGGCCTTATGAAA

Alignment

ORF - retro_ogar_2674 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.73 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MASKGLQDLKQQVEETAQEAVTTAGAKVQQVVNQATDAGQKAMDQLTSSTQETIDKTVKQASDTYSGF-G
          MA.KGLQ.LKQQVEE.A.EAVT.AGA.VQQV..QA...GQKAMDQL.SSTQETI.KT..Q.SD.YSGF..
Retrocopy MANKGLQHLKQQVEEMAEEAVTVAGATVQQVLDQAAETGQKAMDQLASSTQETINKTARQVSDCYSGF>X

Parental  KKLGLMK
          ..LGLMK
Retrocopy XXLGLMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2674 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000009362	1 retrocopy	retro_ogar_2674 ,