RetrogeneDB ID: retro_ogar_2693

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873648.1:5023914..5024633(-)
• Located in intron of: ENSOGAG00000017087

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000031566
• Aliases: None
• Description: None

Sequence

>retro_ogar_2693
ATTGAAACTGTGGTTGGGGTTATGGCCATACTTATTAGATGCAATATTACCACTGCTAATAAGCAGACACAGACCTTCAC
TACCGACTCTGACACCCGGCCTGGCATACTCATTCAGGTTTACAAAGGTAAGTGTCTCATGACCAAGGAGAATAACTTGC
TTAGCAAATTATTATACTTCCTGTCCCCTGCCCCTGTGGTATTCCTCAGATTGAAGTCACTTTTGATATAGGTGCCGATG
GCATTCTCCATGTCTCTGCTGTGGTTAAGAGTTCAGGAAAAGAGATTACCGTCACTACCACAGGGGGTATTTGAACAGGG
AAGACATTGAATGTGTGCTCCGGACACTAAGAAGTACAAGGCTGAAAATGCGAAGCAAAGGGAAAAGGTGTCATCAAAGG
ATTCGTTTGAATCCTATCTATTCACCATGAAAGCAATTGTTGAAGATGAGAAACTTCAAGTCAAGATCTCTGATGAGGGC
AGACTGTAGATTCTTGACAAGAATAATGAAATTATCAACTGGCTTGGTAAGAACCAGATTGCAGAGAAGGAAGAATTTGA
ACATCAGCAGAAGGAGCTGGAGAAAGTCTGAACCCCATCATCACTGAGCTGCACCAGAGTGCAGGAGAGTCACCAGGAGG
ATCAGCAGGAGGGAAGCCTGGAGGCTTCTCTGGAGGCCGAGCCCCTCCTTTTGGTGGAAAGGAGGAAGGAAGTAACATT

Alignment

ORF - retro_ogar_2693 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.32 %
• Parental protein coverage: 64.89 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  IETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPA-PRGV
          IET..GVM..LI..N.T...KQTQTFTT.SD..PG.LIQVY.G...MTK.NNLL.K..L....PA.P.G.
Retrocopy IETVVGVMAILIRCNITTANKQTQTFTTDSDTRPGILIQVYKGKCLMTKENNLLSKL-LYFLSPA<PCGI

Parental  PQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKG-RLSKEDIERMVQ-EAEKYKAEDEKQRDKVSSK
          PQIEVTFDI.A.GIL.VSAV.KS.GKE..IT.T...G..L..EDIE........KYKAE..KQR.KVSSK
Retrocopy PQIEVTFDIGADGILHVSAVVKSSGKE--ITVTTTGG<YLNREDIECVLR<DTKKYKAENAKQREKVSSK

Parental  NSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKV-CNPIIT
          .S.ESY.F.MKA.VEDEKLQ.KI.DE....ILDK.NEIINWL.KNQ.AEKEEFEHQQKELEKV..NPIIT
Retrocopy DSFESYLFTMKAIVEDEKLQVKISDEGRL*ILDKNNEIINWLGKNQIAEKEEFEHQQKELEKV<LNPIIT

Parental  KLYQSAGGMPGGMPGGMPGGFPGGGAPPSGGASSGPTI
          .L.QSAG..PGG..GG.PGGF.GG.APP.GG...G..I
Retrocopy ELHQSAGESPGGSAGGKPGGFSGGRAPPFGGKEEGSNI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2693 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000031566	8 retrocopies	retro_ogar_1036, retro_ogar_202, retro_ogar_2137, retro_ogar_2223, retro_ogar_2693 , retro_ogar_3024, retro_ogar_3242, retro_ogar_458,
Rattus norvegicus	ENSRNOG00000034066	1 retrocopy	retro_rnor_1221,