RetrogeneDB ID:

retro_ogar_273

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873672.1:583295..585059(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000025193
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000029367
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_273
ATGACCGCAGAGGATTCCACTGTAGCCATGAGCAGCGACTCAGCCGCTATGTCCTCGGCCAAGGTGCCGGAGGGCATGGC
GGACGCACCCAACGAGGAGGCGCTGCTGGCGCTGACGGAGCGCACTGGCTACAGCTTAGTGCAGGAGAATGGGCAGCGCA
AGTATGGCGGCCCGCCGCCGGGCTGGGACGGCCCCCACCCGGAGCGCGGATGCGAAGTCTTCGTGGGCAAGATCCCGCGC
GACGTGTATGAGGATGAGCTGGTGCCGGTGTTCGAGATGGTGGGCCGAATCTATGAGCTGCGCCTCATGATGGACTTCGA
CGGCAAGAACCGCGGCTACGCCTTCGTCATGTACTGCCACAAGCAGGATGCCAAGCGCGCCGTGCGCGAGCTCAACGATT
ACGAGATCCGCCCGGGCCGCCTGCTCGGCGTATGCTGCAGCGTGGACAACTGTCGCCTCTTCCTCGGCGGCATCCCCAAG
TTGAAGAAGCGGGAGGAGATCCTGGAGGAGATCACCAAGGTCACTGAGGGCGTGCTGGACGTGATCGTGTATGCCAGCGC
GGCCGACAAGAAGAAGAACCGCGGCTTTGCCTTCGTGGAGTACGAAAGCCACCGCGCGGCCGCCATGGCGCGCCGCAAGC
TCTTGCCCCGCGGCACCCAGCTGTGGGGCCACCACATTGCCGTGGACTGGGCCGAGCCCGAAATCGATGTGGACGAGGAT
GTGATGGAGACCGTCAAGGTCCTCTACGTGCGCAACCTCATGATTGAGACCACCGAGGACACCATAAAGACGAGCTTTGG
CCAGTTTAACCCGGGCTGCGTGGAGCGTGTCAAGAAGATCCGTGACTACGCCTTCGTGCACTTCACCAGCCGCGAGGACG
CTGTGCACGCCATGAACAGCCTCAACGGCACCGAGCTGGAGGGCTCGTGCCTGGAGGTCACGCTGGCCAAGCCCGTGGAC
AAGGAGCAGTACTTGCGCTACCAGAAGGCAACCAAGGGCTGCGGCGGGGCTGAGGCGGTGGCGCAGCTGCCCAGCTACGT
GTACTCCTATGACCCCTACACGCTGACCTACTACAGCTACCCCTGCAACGTGCTCATCGGGCCCAACCAGGACTACTTCG
TGAAAGCAGGCAGCGTAAGAGGCCGAGGGCGAGGTGCAGCTGGCAACAGAGCCCCGGGGCCCAGGGGTTCCTACTTCGGG
GGATATTCTGCTGGCCGTGGCGTGTATAGCCGATATCATGAAGAAAAAGGAAACCAGCAAGAACAAGGATATGAACTTGT
GCCGAATTTGGAAATCTCTGCCGTTAATCCAGTTGCCATGAAACCTGGTACAGTGGTCATCCCTGCCATCGGGGCCCAGT
ATCCCATGTACCAAGCAGCTCCAGCACCTAAAATGATTGAAGATGGCAAAATTCACACGATGGAGCAGGTTATCAGCCCT
GTTGCTGTGCAGCCAGACCAAGCCAGTGCCGCTGCTGCCACTGCAGCCACCGCCGTTATTCCTGCTGTCTCGACGCCGCC
ACCCTTCCAGGGCCGCCCGATAACCCCAATATACACCGTGGCTCCATTCGTTCAGAGAATTCCCACTACCGGGATCTATG
GGGCCAGTTATGTTCCATTTGCCGCTCCGGCCACCGCCACTATCGCCACACTACAGAATAATGCGGCCGCTGCCATGTAC
GGGGGGTATGCGGACTACATACCTCAGGCCTTCCCAGCTGCTGCCATTCAGGTCCCCATTCCCGACGCGTATCAGACATA
CTGA

ORF - retro_ogar_273 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMTAEDSTAAMSSDSAAASSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPGWEGAHPQRG
MTAEDST.AMSSDSAA.SSAKVPEG.A.APNE.ALLAL.ERTGYS.VQENGQRKYGGPPPGW.G.HP.RG
RetrocopyMTAEDSTVAMSSDSAAMSSAKVPEGMADAPNEEALLALTERTGYSLVQENGQRKYGGPPPGWDGPHPERG
ParentalCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGR
CEVFVGKIPRDVYEDELVPVFE.VGRIYELRLMMDFDGKNRGYAFVMYCHK..AKRAVRELN.YEIRPGR
RetrocopyCEVFVGKIPRDVYEDELVPVFEMVGRIYELRLMMDFDGKNRGYAFVMYCHKQDAKRAVRELNDYEIRPGR
ParentalLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA
LLGVCCSVDNCRLF.GGIPK.KKREEILEEI.KVTEGVLDVIVYASAADK.KNRGFAFVEYESHRAAAMA
RetrocopyLLGVCCSVDNCRLFLGGIPKLKKREEILEEITKVTEGVLDVIVYASAADKKKNRGFAFVEYESHRAAAMA
ParentalRRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKI
RRKL.P...QLWGH.IAVDWAEPEIDVDEDVMETVK.LYVRNLMIETTEDTIK.SFGQFNPGCVERVKKI
RetrocopyRRKLLPRGTQLWGHHIAVDWAEPEIDVDEDVMETVKVLYVRNLMIETTEDTIKTSFGQFNPGCVERVKKI
ParentalRDYAFVHFASREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAVAQPPSYVYSC
RDYAFVHF.SREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQY.RYQKA.KG.G.AEAVAQ.PSYVYS.
RetrocopyRDYAFVHFTSREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQYLRYQKATKGCGGAEAVAQLPSYVYSY
ParentalDPYTLAYYGYPYNALIGPNRDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQ
DPYTL.YY.YP.N.LIGPN.DYFVKAGS.RGRGRGAAGNRAPGPRGSY.GGYSAGRG.YSRYHE.KG.QQ
RetrocopyDPYTLTYYSYPCNVLIGPNQDYFVKAGSVRGRGRGAAGNRAPGPRGSYFGGYSAGRGVYSRYHEEKGNQQ
ParentalEKGYELVPNLEISAVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTMEHMISPIAVQPDPASA
E.GYELVPNLEISAVNPVA.KPGTV.IPAIGAQY.M..AAPAPKMIEDGKIHTME..ISP.AVQPD.ASA
RetrocopyEQGYELVPNLEISAVNPVAMKPGTVVIPAIGAQYPMYQAAPAPKMIEDGKIHTMEQVISPVAVQPDQASA
ParentalAAAAAAAAAAAAVIPAVSTPPPFQGRPITPVYTVAPNVQRIPTAGIYGASYVPFAAPATATIATLQKNAA
AAA.AA.A....VIPAVSTPPPFQGRPITP.YTVAP.VQRIPT.GIYGASYVPFAAPATATIATLQ.NAA
RetrocopyAAATAATA----VIPAVSTPPPFQGRPITPIYTVAPFVQRIPTTGIYGASYVPFAAPATATIATLQNNAA
ParentalAAVYGGYAGYIPQAFPAAAIQVPIPDVYQTY
AA.YGGYA.YIPQAFPAAAIQVPIPD.YQTY
RetrocopyAAMYGGYADYIPQAFPAAAIQVPIPDAYQTY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_273 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Monodelphis domestica ENSMODG000000070031 retrocopy
retro_mdom_39,
Otolemur garnettii ENSOGAG000000091791 retrocopy
retro_ogar_3144,
Otolemur garnettii ENSOGAG00000029367 1 retrocopy
retro_ogar_273 ,


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