RetrogeneDB ID: retro_ogar_2867

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873673.1:3427723..3427974(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000000144
• Aliases: None
• Description: None

Sequence

>retro_ogar_2867
AAGAGAAGGAAAAAGAACATTTTGGACCTGTCCAAGTACATTGCCCAGATGATTCGCATGAAGTTCCAGGGAGGCCTTCA
AGCCAGTGGAATCTTGAAAGGGTTCCATCTGCTCCTCAACCTTGTGCTGGATGAGACCACTGAATACATGAGAGACCCCA
TGACCAGTACAAGCTCATGGAGGACACATGCCAGCTGGGCCTGAGGGTGTACAGGAGCACATCTGTGGTGCTCATCTGCC
TGCACAGAGGT

Alignment

ORF - retro_ogar_2867 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.76 %
• Parental protein coverage: 82.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD-PDDQYKLTEDTRQLGLV
          K..K..ILDLSKYI...IR.KFQGG..ASGILKGF..LLNLVLD.T.EYMRD.P.DQYKL.EDT.QLGL.
Retrocopy KRRKKNILDLSKYIAQMIRMKFQGGLQASGILKGFHLLLNLVLDETTEYMRD<PHDQYKLMEDTCQLGLR

Parental  VCRGTSVVLICPQDG
          V.R.TSVVLIC...G
Retrocopy VYRSTSVVLICLHRG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2867 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013097	1 retrocopy	retro_mluc_331,
Mus musculus	ENSMUSG00000035215	1 retrocopy	retro_mmus_160,
Otolemur garnettii	ENSOGAG00000000144	3 retrocopies	retro_ogar_107, retro_ogar_2736, retro_ogar_2867 ,
Rattus norvegicus	ENSRNOG00000019552	1 retrocopy	retro_rnor_1403,