RetrogeneDB ID:

retro_ogar_2998

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873694.1:678982..681356(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BCL9
Ensembl ID:ENSOGAG00000003597
Aliases:None
Description:B-cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:1008]


Retrocopy-Parental alignment summary:






>retro_ogar_2998
GGAAACCCTCAGCTGGATTCCAAATTCTCTAATCAGGTATGTAATTCTGCTGACCATATAAAGTCCCAGAATTCCCAGCA
CACACCATACTTGATGACCCCATCAAATGCTACAGCCCACAGGTCTTCCACCCCCTCCCATGGCCAAACTACTACTCCAG
AGCCCACACTTGCTCAGAAAACTCCAGCCAAAATGGTGTATGTGTTTTCTACTGAGATGGCCAATAAGGCTGCAAAAGCT
TTATTGAAGGGCCAGGTTGAAACTATCTTCTCTTTCCACATACAGAATATTTCTATCAGCAAGATGGAGAGAAGCACAGC
CCCTCTGAACACACAAATACCTGCCCTTCAGAATGATCCAAAACCTCTCCCACCACAGCCCACAGCTCCCACTACCCAGG
ACCAGAACTCTTCCCAGAACACCAGACTTCGGCCAACTCCACCAATTCTAGCACTAGCACCCAAACCTGCCTTACCCTCA
TGTCCCGTGGACCAGGATAGTCCTGGGGTAGAAAATAAATTGATTCTTTCTGTAGGTAGTCCTACCAGCTCCCCTCCACT
GCCCCCAGATAGTACTGGGCCAAATTTGATACCTAACAACAGAGCAGTGACCCCTGCCTCCCAGGGAAGCAACAGCTCTT
CAGCAGATCCCAAAGCCCCTCCACCTCCACCTGTGTCCAATGGCAAGGCCCCCATGCTGGGAGAGAACCTTGATGGCCTA
TCTCTGGAGCAGCAGGAGCACCAAGAGGGCTCCCTACAGACTCTAGAGACATCCAGTGTATGCTTTTCCCTGAAGAGAAG
GAATTCACAGGAGCAAAAGTGGGCCACTCCCACAGAACACTAGGGTATTAGATGGACCTCAGAAAAAACCAGAAGGGCCA
ATACAAGCCATGATGGCTCAATCCCAAAATCTAGGTAAGGAACTTCTGCCCCAGACAGATGTGGGAGCTCCATTTGTCCC
TCAGGGACATAGAGATTTGCTCTTTGCTCCAGATTAAATGGTTCCACCTTCTATAAACTCCCAGTCTGAACCCATAGGAC
CAAACCACCTGGACCACATCACTCCAGAGTAGATAGTGTGGCTGAAGCTACAGCAGAAGTTTAATGAAGAGAAAAGGAGG
AAGGAGGAACGAGTGGTGGTCCAGCAGTTCTCCATCCAGGACATACTGAGCTATCAGCACAGGCCTTGGTGGATGTTCTG
AGGGCCTCCCCCTCCATACCAAATGACTCCTAGTGAGGGATGGGCACCTGGTGGTGTAGAACCATTTTCTGATGGTATCA
ACATGACATATTTACTCCCCCTGAGGGGCATGGCTCCCCACCCCAACATGCCACGAAGCCAAATGCACCTCCCTGGATTT
GCAGGAATGATTAACTCTGAGATGGAAGGGCCAAATGTGGCCAACCAAAGGTCTAGACCTGGTCTTTCTAGAGTCAGTTG
GCCAGATGATGTGCCAAAAATCCCAGATGGTAGAAATTTTCCTCATGGCCAGGGTGTCTTTAGCAGTCCTGGCCAATGAG
AACACATCCCAAATCCCCAAGGACTGTCTGAAGAGATATTTCAACAGCAGCTGGTGGAGAAACATCTGGGAATCCCCTCA
GGGATGGGCATGGAAGGCATCAGGCCCAGCATGAAGATGAGCAGGATGATCCCAAGTGCCCAGCACCACATGGAGCCAGG
GAGAAACCCCCATTTTTCCCTAGAATACTAGTTGAGGGCTCACACAGTTCTTCTAGGGGTGACTTTTCAAAAGGAATGCC
TCCAAAAATAGGCCCTGCTCAGGAACTTGACTTTGGGATGGTTCCTGGTAGGATGGAAGGAAAATGTCAACCTGAGTATG
AGCATGGGTTCCAACTCTGAGATGATACATCAGAAGATGAGAGAGGCCTGGGTAGGCTCTTAGGAGATGCTGAGACTGCA
CCTGGGTGGCTCAAATGTGCTGCCCACTCAGCAGAAGTTGGTACCCTTGTTGTTTAGAGAGCACCTCCAGTAGGAGTATG
GCATGGGCCCCAGGCCCTTCCTTCCTATGTCTCAGGGTCCAATCCACAGAAATGGCTTGCAGAACCTCAGAGAACTAATA
GGGCATGACTAAAGGACTAAGAGCTGGCTCAGTCACATGCCACTATGACCTCTAAACCCTTCCAGAAACACCAGCAGTCC
CAACACAGTAGCTCCCAGTTAGCAAGGTCTGGGGTGGAAGCCCTTGGATATATCTGTGGCAGGTGGCCAGGTGCATTCCC
CAGGAATTAAGTCTCTGAGGTCTCCCATGATACACCAAGTCCAGTCCCCAATGCTGGGCTTGCCTTCAGAGACCCTCAAG
TACCCCTGGACTCCATCACAACTGTCAGGCATGATGATGGGCCTGGCTACTGCC

ORF - retro_ogar_2998 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.01 %
Parental protein coverage: 55.33 %
Number of stop codons detected: 9
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalGTPNDDSDIKE--CNSADHIKSQDSQHTPHSMTPSNATAPRSSTPSHGQTTAPEPTPAQKTPAKVVYVFS
G.P..DS......CNSADHIKSQ.SQHTP..MTPSNATA.RSSTPSHGQTT.PEPT.AQKTPAK.VYVFS
RetrocopyGNPQLDSKFSNQVCNSADHIKSQNSQHTPYLMTPSNATAHRSSTPSHGQTTTPEPTLAQKTPAKMVYVFS
ParentalTEMANKAAEAVLKGQVETIVSFHIQNISNSKTERSTAPLNTQIPALRNDPKPLPPQPPAPTSQDQNSSQN
TEMANKAA.A.LKGQVETI.SFHIQNIS.SK.ERSTAPLNTQIPAL.NDPKPLPPQP.APT.QDQNSSQN
RetrocopyTEMANKAAKALLKGQVETIFSFHIQNISISKMERSTAPLNTQIPALQNDPKPLPPQPTAPTTQDQNSSQN
ParentalTRLQPTPPIPAPAPKPAAPPRPLDQDSPGVENKLIPSVGSPASSTPLPPDGTGPNSTPNNRAVTPASQGS
TRL.PTPPI.A.APKPA.P..P.DQDSPGVENKLI.SVGSP.SS.PLPPD.TGPN..PNNRAVTPASQGS
RetrocopyTRLRPTPPILALAPKPALPSCPVDQDSPGVENKLILSVGSPTSSPPLPPDSTGPNLIPNNRAVTPASQGS
ParentalNGSSADPKAPPPPPVSSGEPPALGENPDGLSQEQLEHRERSLQTL-RDIQRMLFPDEKEFTGAQ-SGPPP
N.SSADPKAPPPPPVS.G..P.LGEN.DGLS.EQ.EH.E.SLQTL.RDIQ.MLFP.EKEFTGA..SGP.P
RetrocopyNSSSADPKAPPPPPVSNGKAPMLGENLDGLSLEQQEHQEGSLQTL<RDIQCMLFPEEKEFTGAK<SGPLP
ParentalQNTGVLDGPQKKPEGPIQAMMAQSQSLGKGPGPRTDVGAPFGPQGHRDVPFAPDEMVPPSMNSQSGPIGP
QNT.VLDGPQKKPEGPIQAMMAQSQ.LGK...P.TDVGAPF.PQGHRD..FAPD.MVPPS.NSQS.PIGP
RetrocopyQNTRVLDGPQKKPEGPIQAMMAQSQNLGKELLPQTDVGAPFVPQGHRDLLFAPD*MVPPSINSQSEPIGP
ParentalDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQVVVQQCSLQDMMVHQHGPRGVVRGPPPPYQMTPSEGWAPG
.HLDH.TPE.I.WLKLQQ.F.EEKRRK.E.VVVQQ.S.QD....QH.P.....GPPPPYQMTPSEGWAPG
RetrocopyNHLDHITPE*IVWLKLQQKFNEEKRRKEERVVVQQFSIQDILSYQHRPWWMF*GPPPPYQMTPSEGWAPG
ParentalGAEPFSDGINMPHSLPPRGMAPHPNMPGSQMRLPGFAGMINSEMEGPNVANPAARPGLSGVSWPDDVPKI
G.EPFSDGINM...LP.RGMAPHPNMP.SQM.LPGFAGMINSEMEGPNVAN...RPGLS.VSWPDDVPKI
RetrocopyGVEPFSDGINMTYLLPLRGMAPHPNMPRSQMHLPGFAGMINSEMEGPNVANQRSRPGLSRVSWPDDVPKI
ParentalPDGRNFPSGQGVFSGPGRGERFPNPQGLSEEMFQQQLAEKQLGLPPGMGIEGIRPSMEMSRMIPGTQRHM
PDGRNFP.GQGVFS.PG..E..PNPQGLSEE.FQQQL.EK.LG.P.GMG.EGIRPSM.MSRMIP..Q.HM
RetrocopyPDGRNFPHGQGVFSSPGQ*EHIPNPQGLSEEIFQQQLVEKHLGIPSGMGMEGIRPSMKMSRMIPSAQHHM
ParentalEPGSN-PIFP-RIPVEGPLSPSRGDFPKGMPPQIGSARELEFGMVPGGMKG-DVNLSVSMGSNSQMIPQK
EPG.N.PIFP.RI.VEG..S.SRGDF.KGMPP.IG.A.EL.FGMVPG.M.G..VNLS.SMGSNS.MI.QK
RetrocopyEPGRN>PIFP>RILVEGSHSSSRGDFSKGMPPKIGPAQELDFGMVPGRMEG>NVNLSMSMGSNSEMIHQK
ParentalMREAGAGPEEMMKLRPGGSDVLPAQQKLVPLPFGEHPQQEYGVGPRPFLPMSQGPSSSSGLRNLREPMGP
MREA..G..EM..L..GGS.VLP.QQKLVPL.F.EH.Q.EYG.GPRPFLPMSQGP....GL.NLRE..G.
RetrocopyMREAWVGS*EMLRLHLGGSNVLPTQQKLVPLLFREHLQ*EYGMGPRPFLPMSQGPIHRNGLQNLRELIGH
ParentalDQRTNSRLSHMPPLPLNPSSNPSSLNTAPPVQRGLGRKPLDISVAGGQVHSPGINPLKSPTMHQVQSPML
D.RT.S.LSHMP..PLNPS.N.SS.NT..P...GLG.KPLDISVAGGQVHSPGI..L.SP..HQVQSPML
RetrocopyD*RTKSWLSHMPL*PLNPSRNTSSPNTVAPS*QGLGWKPLDISVAGGQVHSPGIKSLRSPMIHQVQSPML
ParentalGSPSGNLKSPQTPSQLAGMLAGPAAA
G.PS..LK.P.TPSQL.GM..G.A.A
RetrocopyGLPSETLKYPWTPSQLSGMMMGLATA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_2998 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000003597 1 retrocopy
retro_ogar_2998 ,


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