RetrogeneDB ID:

retro_ogar_30

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873748.1:630810..632748(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000000449
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000034361
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_30
CCGGGCCCAGAGGCCGAGGACTTTGAGCGCAGCTCGCACTGGTCGGAGCTGTGCTGGCGGCAGAACGAGCAGCGGCGCCT
GGGCCTCTACTGCGACATCACCTTGTGCTTCGGCGGGGCCGGAGGCCCGGAGTTCCGGGCCCACCGCTCGGTGCTGGCCG
CCGCCACCAAGTACTTCAGGGCCCTGCTCTCGGGCCAGTTTGCCGAGTCCCGCTCGGGCCGGGTGGAGATGCGCGACTGG
CGCTGCGAGCCGGGGCCCGAACCCGCCACGGTGGAGGCCGTGATCCAGTACATGTACACCGGGCGCATCCGCCTCAGCAC
CGCCAGCGTGCACGAGGTGCTGGAGCTGGCCGACAGGTTTTTATTAACTCGTTTAAAAGAATTTTGTGGCGAATTTCTCA
AGAAAAGACTTCATCTCTCAAATTGTGTAGCCATTCATAGCTTAGCTCACATGTACAACCTAAGCCAGCTTGCTCTGAAA
GCTGTCGATATGATACGGAGAAATTTCCACCGAGTCATTCAGGATGAAAAATTTTATGCTTTACCTTTCCATTTCGTTCG
AGACTGGCTTTCAGACTTGGAAATCACGGTTGATTCTGAAGAGGCTCTCTTTGAAACAGTTTTGAAGTGGGTTCAGAGAA
ATGCTGAAGAGAGAGAGAGATATTTTGAAGAACTTTTTAAATTGCTCAGGTTGTCCCAGATGAAACCTACCTACCTTACT
TGGCGTGTCAAACCGGAGAGGCTGGTAGCCGATAATGAAGTTTGTGTCAAGTTGGTGGCTGAGGCAGTGGAGAGACATGC
CCTGAGAGCTGAGAATGTACAATCTGTCACCTTCCAGCCTCCTGCTTCTTATGTCTCATCATTACCTCGTTTTGGGCAAA
ACATGGACGTGATCATGGTTATTGGGGGTGTGTCAGAAGGAGGGGACTATTTAAGTGAATGTGTGGGATATTTTGTTGAT
GAGGACAGATGGGTAAACCTGCCCCATATTCATAATCACCTTGATGGACATGCTGTTGCAGTAACAGAATCTTACGTGTA
TGTTGCTGGATCGAGGGAACCAGGGTTTGCTAAAACTGTAGAAAGGTATAACCCAAATTTGAATACATGGCAACAAGTTT
CTAGTCTGATGACAGGAAAGCATTCTTTTGGACTGACAGAAGTCAAAGGGAAGCTCTATAGCATTGGAGGACACGGCAAC
TTTAGTCCTGGCTTTAAAGATGTGACTGTTTATAATCCTGAGCTTGATAAATGGTACAACTTGGAATCTGCACCAAAGAT
TCTTCGAGATGTCAAAGCACTAGCCGTTGAAGACCGCTTTGTGTACATTGCCGCCCGCACTCCTGTGAACCCGGACACTG
AAGATGAATTAACAGCTGTAATTACTTGCTATGATACAGGGACTCGACAGTGGCAAGATGTAGCGTCTTTGCCACTTATT
GACAATTACTGCTTTTTCCAAATGTCGGTGGTCAACTCAAACTTTTATCAGACAGCATCATGCTGTCCAAAGAGTTATTC
TTTAGAAAATGAAGAGGCAGTAAGAAAAATTGCCAGTCCAGCATCTGATGAGATCCTTGAAAGCCTGCCTCCAGAAGTCC
TTAGCATCGAAGGAGCAGCCATTTGCTATTACAAAGATGACATCTTCATTATTGGAGGCTGGAAAAACAGTGCTGATATT
GACAAACAGTATCGGAAAGAAGCCTATCGATACTGTGCTGAGAGAAAGAGGTGGATGCTTCTTCCTCCCATGCCACAACC
TCGTTGTAGAGCCACTGCTTGTCATGTGAGGATCCCATACCGGTACTTGCATGGCACACAGAGATATCCTAGACCTCAAA
ACCTAATGTGGCAGAAAGGCTGCATCAGACAGATTCAAGAAAGACATCGGCACACCGTAAACATGCGGAGAGTCGCCTGC
TTTCCGATCAAATGCTAG

ORF - retro_ogar_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.51 %
Parental protein coverage: 94.74 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPGPEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES
PGPEAEDFE.SSH.SEL.WRQNEQRR.GL.CDITLCFGGAGG.EFRAHRSVLAAAT.YF..LLSGQF.ES
RetrocopyPGPEAEDFERSSHWSELCWRQNEQRRLGLYCDITLCFGGAGGPEFRAHRSVLAAATKYFRALLSGQFAES
ParentalRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKFLKKKL
RSGRVEMR.W..EPGPEP.TVEAVI.YMYTGRIR.ST.SVHEVLELADRFLL.RLKEFCGE...FLKK.L
RetrocopyRSGRVEMRDWRCEPGPEPATVEAVIQYMYTGRIRLSTASVHEVLELADRFLLTRLKEFCGE---FLKKRL
ParentalHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETV
HLSNCVAIHSLAHMY.LSQLALKA.DMIRRNFH.VIQDE.FY.LPFH..RDWLSDLEITVDSEE.LFETV
RetrocopyHLSNCVAIHSLAHMYNLSQLALKAVDMIRRNFHRVIQDEKFYALPFHFVRDWLSDLEITVDSEEALFETV
ParentalLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAENIQSAT
LKWVQRNAEERERYFEELFKLLRLSQMKPTYLT..VKPERLVA.NEVCVKLVA.AVERHALRAEN.QS.T
RetrocopyLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTWRVKPERLVADNEVCVKLVAEAVERHALRAENVQSVT
ParentalFQHPASHVSLLPRFGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVY
FQ.PAS.VS.LPRFGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVY
RetrocopyFQPPASYVSSLPRFGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVY
ParentalVAGSMEPGFAKTVERYNPNLNTWEHVCSLMTRKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDK
VAGS.EPGFAKTVERYNPNLNTW..V.SLMT.KHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDK
RetrocopyVAGSREPGFAKTVERYNPNLNTWQQVSSLMTGKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDK
ParentalWHNLESAPKILRDVKALAIEDRFVYIAARTPVDRDTEDGLKAVITCYDTETRQWQDVESLPLIDNYCFFQ
W.NLESAPKILRDVKALA.EDRFVYIAARTPV..DTED.L.AVITCYDT.TRQWQDV.SLPLIDNYCFFQ
RetrocopyWYNLESAPKILRDVKALAVEDRFVYIAARTPVNPDTEDELTAVITCYDTGTRQWQDVASLPLIDNYCFFQ
ParentalMSVVNSNFYQTASCCPKSYSLENEEAVRKIASQVSDEILESLPPEVLSIEGAAICYYKDDVFIIGGWKNS
MSVVNSNFYQTASCCPKSYSLENEEAVRKIAS..SDEILESLPPEVLSIEGAAICYYKDD.FIIGGWKNS
RetrocopyMSVVNSNFYQTASCCPKSYSLENEEAVRKIASPASDEILESLPPEVLSIEGAAICYYKDDIFIIGGWKNS
ParentalDDIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPMPQNLMWQKDRIRQMQE
.DIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYP.PQNLMWQK..IRQ.QE
RetrocopyADIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPRPQNLMWQKGCIRQIQE
ParentalIHRHALNMRRVPSSQIEC
.HRH..NMRRV....I.C
RetrocopyRHRHTVNMRRVACFPIKC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_30 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000034361 1 retrocopy
retro_ogar_30 ,


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