RetrogeneDB ID: retro_ogar_300

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: AAQR03192957.1:4705..5107(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016334
• Aliases: None
• Description: None

Sequence

>retro_ogar_300
GCCATGGGTCGCTCCAGCCGGACTGGAGCGCTCCAAGCGCACTCCCTAGCTGGCCAGATGAAGGTGAAGGGGCCGAAGCC
CGACCTGGATGAAATTCACCGCGAGCTGCGGCCTTAGGGTTCCACATAGTTCTTGTCCAACCCGTACGCTGAACCTGACC
CTGACCTGCTAAGGGGCGGCCTGCATCGCTGTCTGGCCTGCCCTAGGTACTTCATCAATTCTGCCACACTGAAGACCCAC
TTTTGATCCAAAGACCACAAGAAAAGGCTGAAGCAGCTGTGTGTCGAGCCCTATAGTCAGCAAGAGGTGGAGAGGGCAGT
GGGTGTAGGTTTCTGTGTGCCCCCTAAGACACTTGCAGTGCCAACAGAAGTGTCCACTGATGTCCCTGAGATGGACACAT
CT

Alignment

ORF - retro_ogar_300 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.1 %
• Parental protein coverage: 98.53 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AMGRSRRTGAHRAHSLARQMKARRRKPDLDEIHRELRPQGPTRPLSNPGAEPDPDLPGGGLHRCLACARY
          AMGRS.RTGA..AHSLA.QMK....KPDLDEIHRELRP.G.T..LSNP.AEPDPDL..GGLHRCLAC.RY
Retrocopy AMGRSSRTGALQAHSLAGQMKVKGPKPDLDEIHRELRP*GST*FLSNPYAEPDPDLLRGGLHRCLACPRY

Parental  FIDSSNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPKRLAVPTEVSTDVPEMDTS
          FI.S..LKTHF.SKDHKKRLKQL.VEPYSQ.E.ERA.G.G..VPPK.LAVPTEVSTDVPEMDTS
Retrocopy FINSATLKTHF*SKDHKKRLKQLCVEPYSQQEVERAVGVGFCVPPKTLAVPTEVSTDVPEMDTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_300 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010172	1 retrocopy	retro_mluc_2524,
Macaca mulatta	ENSMMUG00000004682	1 retrocopy	retro_mmul_138,
Otolemur garnettii	ENSOGAG00000016334	3 retrocopies	retro_ogar_300 , retro_ogar_3212, retro_ogar_68,