RetrogeneDB ID: retro_ogar_3081

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873711.1:2705356..2705832(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TANGO2
• Ensembl ID: ENSOGAG00000004850
• Aliases: None
• Description: transport and golgi organization 2 homolog (Drosophila) [Source:HGNC Symbol;Acc:25439]

Sequence

>retro_ogar_3081
TGCACCATCTTCTTTATGTTTGATCCTCACCTTGTTTCCAAAAATGTGTACAGGCTCATCCTAGCAGCCAACAGGGACGA
ATACTACAGCAGATCGTCCAAGTTAGTGGACTTCTGGGGCAACTGCAAAGAGGTGCTCAGTGGGCTCCAGATGGAGGAGA
AGGAAGGAGGCCCGTGGCTGGGCATCAGCAAGTGGGGGAAGCTGGTAGCACTCACCAACCACCTGCAGCAGTGACTGGAC
TGTGAGGCCAGGGACAAGAAGAACGGGAGACCCATTTTCTGACCACTGACATGGACAGCTTGTCCTACCTGAAGAAGGTC
TCTATGGAGGGTCACCTGTACAATGGCTTCAACCTCACAGAATCCGATCTCAGAACCACCAGGGGAGATGTCATTTGAAA
CCGGGGCAATCCTGAATCCGTTGTCCTGGCACTAGGGACCTATGGGCTGAGCAACCCACTACTGGAGACACAGTGG

Alignment

ORF - retro_ogar_3081 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.61 %
• Parental protein coverage: 59.06 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CIIFFKFDPRPVSKNAYRLILAANRDEFYSRPSKLADFWGNSNEVLSGLDMEEGKEGGTWLGISTRGKLA
          C.IFF.FDP..VSKN.YRLILAANRDE.YSR.SKL.DFWGN..EVLSGL.MEE.KEGG.WLGIS..GKL.
Retrocopy CTIFFMFDPHLVSKNVYRLILAANRDEYYSRSSKLVDFWGNCKEVLSGLQMEE-KEGGPWLGISKWGKLV

Parental  ALTNYLQPRLDREAR-GRGELVTHFLTTDMDSLSYLKKVSMEGHLYNGFNLIAADLSTTRGDIICYYGNR
          ALTN.LQ..LD.EAR.G..E..THFLTTDMDSLSYLKKVSMEGHLYNGFNL...DL.TTRGD.I...GN.
Retrocopy ALTNHLQQ*LDCEAR<GQEERETHFLTTDMDSLSYLKKVSMEGHLYNGFNLTESDLRTTRGDVI*NRGN-

Parental  GDPEPVVLAPGTYGLSNALLETPW
          ..PE.VVLA.GTYGLSN.LLET.W
Retrocopy --PESVVLALGTYGLSNPLLETQW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3081 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000004850	1 retrocopy	retro_ogar_3081 ,