RetrogeneDB ID: retro_ogar_321

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:18189582..18190209(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CINP
• Ensembl ID: ENSOGAG00000009451
• Aliases: None
• Description: cyclin-dependent kinase 2 interacting protein [Source:HGNC Symbol;Acc:23789]

Sequence

>retro_ogar_321
GCAAAGACTCTTGGGATTGCAACTCCCAGAAAACCTGTCTTATGTGTCAGTGCAAGAAAAATTAAGGACAACGCAGCTGA
TTGGCATGATTTAATCATGAAATGGGAAACTCTCAATGATGCAGGCTTTACTACTGCAGGTAATATTGCCAACCTGAAAG
TCAGTTTATTAAGTAAAGACAAGGTACAATTGGAGAGCAGCAGCCCAGCTTCCACTGAAAAAGAAGAGCCGTATCCAGAA
TATACGGAAGAACTGGAGACACTGTGTGAAGACTTACAGGCCACCTTGAATGCTTTGACCAAAATACAGGCGAAAATGGA
AAAGCTGTCTTCAACTACCGAGGGAATACGTGAACTAGAAAATTACCATGATGGGGAGGAGACTAAACGGCCCCTTCTGC
TTCACACATGGCCTCCAACCCATCTCTATGAGGTTTCCTGAAAGCTTTCTGACATGCACAGGAAGGAGCTGCTCCTGAAG
CAAACTGTGGTCGAAGAGCTTGCACACGCCTCAGCCCACGACCTCACCCTGAGCTACTTGTCAATGTGGCTGTGCCAGCC
CTACGTGGAGAGTGACAGCAAGCTGCACCTGGAAAGCATGCCACTGGAAACGGGGCACCGAGCACTG

Alignment

ORF - retro_ogar_321 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.95 %
• Parental protein coverage: 99.05 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AKTLGIATPRKPVLCVSARKIKDNAADWHNLIMKWETLNDAGFTTASNIANLKVSLLSKDKVQLESSSSA
          AKTLGIATPRKPVLCVSARKIKDNAADWH.LIMKWETLNDAGFTTA.NIANLKVSLLSKDKVQLESSS.A
Retrocopy AKTLGIATPRKPVLCVSARKIKDNAADWHDLIMKWETLNDAGFTTAGNIANLKVSLLSKDKVQLESSSPA

Parental  SSEKEEPYPEYNEELETLCEELQATLNALTKIQVKMEKLSSTTKGICELENYHYGEETKRPLLFHTWPTT
          S.EKEEPYPEY.EELETLCE.LQATLNALTKIQ.KMEKLSSTT.GI.ELENYH.GEETKRPLL.HTWP.T
Retrocopy STEKEEPYPEYTEELETLCEDLQATLNALTKIQAKMEKLSSTTEGIRELENYHDGEETKRPLLLHTWPPT

Parental  HFYEVSQKLSDMYRKELLLKQTVVEELAHSSDHDLILSYLSMWLYQPYLESDSKLHLESMLLETGHRAL
          H.YEVS.KLSDM.RKELLLKQTVVEELAH.S.HDL.LSYLSMWL.QPY.ESDSKLHLESM.LETGHRAL
Retrocopy HLYEVS*KLSDMHRKELLLKQTVVEELAHASAHDLTLSYLSMWLCQPYVESDSKLHLESMPLETGHRAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_321 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000013323	1 retrocopy	retro_mdom_1091,
Oryctolagus cuniculus	ENSOCUG00000026866	1 retrocopy	retro_ocun_1274,
Otolemur garnettii	ENSOGAG00000009451	1 retrocopy	retro_ogar_321 ,
Sarcophilus harrisii	ENSSHAG00000007660	3 retrocopies	retro_shar_293, retro_shar_294, retro_shar_594,