RetrogeneDB ID:

retro_ogar_3295

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873769.1:135601..137354(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000030195
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:CEP85L
Ensembl ID:ENSOGAG00000009073
Aliases:None
Description:centrosomal protein 85kDa-like [Source:HGNC Symbol;Acc:21638]


Retrocopy-Parental alignment summary:






>retro_ogar_3295
AAACAGTCATCAACTCTGGACTGCAAGTACAAATTTGAGAGCTACAGCAAAGAGGACTTTAGTGCCTCTTCCTCTACTCA
TAGGAGACAGGCCTTAGACATGACATAGAGTGACTTACCTAAGCCCATTATGATGAACTCAAAGGATTTTGAATCTCTAA
AATATTTAATGCCTAGTCAACAGGCAGTAGATGGAGTTCCCATTCAGCCCTCTGTGAGGACTCAGTTGTGGCTTATAGAA
CAGTTGTGGACTAACCCTTTGGAAGGTAGAACTACAGAAGATTCTTACAGTTTAGCTCCTTAGCAACAACAGCAAATTGA
AGAGTTTCGATGAGGAACTGAAGCACCAAATACAGGTTTTGACTGGATCGTCTCATCAAAGTTATTTACCTTCTGACTAT
CAGGATTTCAGTCAGTGGGAATCAATGTTGAAAGTAAAAGAAGGATTTCTAAGGCAGAAAGAAATTGTAATTGATCGGCA
GAAACAGCTAATTATTCACCTACAAGAGAAGATACAGGATAATGAATTATGGGCGCAACATGCCACGTTAGGACATTATG
TAAACTGTGAGGATTCTAATGTGGCTAGTTTGCAGCCACAGTATGAGGACACTTCACTCCAGTCTCCATTTTCAGAAGAA
TCAGTGTCCCATTCCCAGCAAGAAGAACTTGACCAAAAGCTTGCATCTCCTGAGAAAGAAGGTTTACAGCTCAATGAGTT
TCTCAAACAAAAAATAAGCCAATTTAGTGAGGAGAAGAAGAAATTGGAGGAAAAGCTTAAAACCAGAGATAGATACATCA
GTAGCCTGCAAAATAAATACCAGAAGCAATGTGAACAAAACAAAGAAAAGCAGAGAAGAATTGAGACCTTGGAAAAGTAT
CTGGCTGATCTTCCAACTCTAGATGATGTACAGAGTCAGAGTCTACAGCTGCAGGTTCTAGAAGAAAAAAATAAGAATTT
GCAAGAGACTTTGACAGCTACAGAAAAAAAGCTTGACGAGATCAAAAAACAATGTCAAGATAAAGAGGCCCAGTTAATAT
GCCAGAAAAAGAAAGAAAAAGAGTTAGTAACTACTGTTCAGAGTTTGCAACAAAAAGTAGAACGATGTCTTGAAGATGGA
ATTCGCCTCCCCATGTTAGATGCAAAACAGCTTCAGAACGAGAACGATAATCTCAGGGAGCAAAACGAGACTGCTCGTAA
GATAATAGACAGTCAACGAGGTGAGACTGACAGAATGACTTTAGAACTTCAGTCTATGCAAGGGAAACTTTCTAAAGAGA
AACTGGCCACTCAAAATATGATGGAGGAGCTGGAAAGGAAAGAAAGACGCCTACAGAGATTAACAAAAGCGTTGCTTGAA
AACCAAAGACAGACAGAAAAGATGCGCTCTTTAACGGATCAGGGGCAGGAAGCAGACCCCTTGGGACAGCTGACCCTTCT
TTCCAAACAGCCTCTATTTGATTTCACTGCGATTGATCAGCTGTTCAAGGAAATGTCCCATTGTTTGTTTGACTTGAAAG
CGTTGTGTAGTATTCTTCATCAGCGTGCTCAGGGCAAGGAGCCTGATCTTTCATTATTACTGGGAATCAGATCAATGAAT
TGTTCAGCTGAGGAGACCGAGAATGACCATAGTCAAGAATCACTCACTAAAAAATTGTCCGATGTGTGCCAGTTACGGAA
GGACATTGATGAGTTAAGGACTTCAATATCAGACTGCTATGCTCAGGACATAGGAGACAACTGCGTGACCCAG

ORF - retro_ogar_3295 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.2 %
Parental protein coverage: 83.24 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKRSSTLDCKYKFESCSKEDFRASSSTLRRQALDVTYSALPESKPIMMNSEGFESPKYLMLGQQAVDGVPI
K.SSTLDCKYKFES.SKEDF.ASSST.RRQALD.T.S.LP..KPIMMNS..FES.KYLM..QQAVDGVPI
RetrocopyKQSSTLDCKYKFESYSKEDFSASSSTHRRQALDMT*SDLP--KPIMMNSKDFESLKYLMPSQQAVDGVPI
ParentalQPSVRTQMWLTEQLRTNPLEGRTTEDSYSLTPWPQQQIEEFRQGTEAPT-QVLTGSSRQSYSPSGYQDFS
QPSVRTQ.WL.EQL.TNPLEGRTTEDSYSL.P..QQQIEEFR.GTEAP..QVLTGSS.QSY.PS.YQDFS
RetrocopyQPSVRTQLWLIEQLWTNPLEGRTTEDSYSLAP*QQQQIEEFR*GTEAPN>QVLTGSSHQSYLPSDYQDFS
ParentalKWESMLKIKEGLLRQKEIVIDRQKQQITHLHERIRDNELRAQHAMLGHYVNCDDSYVATLQPQYENTSLP
.WESMLK.KEG.LRQKEIVIDRQKQ.I.HL.E.I.DNEL.AQHA.LGHYVNC.DS.VA.LQPQYE.TSL.
RetrocopyQWESMLKVKEGFLRQKEIVIDRQKQLIIHLQEKIQDNELWAQHATLGHYVNCEDSNVASLQPQYEDTSLQ
ParentalSPFSEESASHSQQEELEQKLASAEKEVLQLNEFLKQKISQFSEEKKKLEEKLKTRDRYISSLKKKCQKES
SPFSEES.SHSQQEEL.QKLAS.EKE.LQLNEFLKQKISQFSEEKKKLEEKLKTRDRYISSL..K.QK..
RetrocopySPFSEESVSHSQQEELDQKLASPEKEGLQLNEFLKQKISQFSEEKKKLEEKLKTRDRYISSLQNKYQKQC
ParentalEQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETLIATEKKLEEFKKQCQDKETQLIC
EQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETL.ATEKKL.E.KKQCQDKE.QLIC
RetrocopyEQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETLTATEKKLDEIKKQCQDKEAQLIC
ParentalQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLREQNETARKIIDSQQGEIDRMTLEIQ
QKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLREQNETARKIIDSQ.GE.DRMTLE.Q
RetrocopyQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLREQNETARKIIDSQRGETDRMTLELQ
ParentalSMQGKLSKEKLTTQNMIEELEKKERSLQRLTKALLENQRQTEEICSLMDQGQEADPSRQQTLLSKRPPFD
SMQGKLSKEKL.TQNM.EELE.KER.LQRLTKALLENQRQTE...SL.DQGQEADP..Q.TLLSK.P.FD
RetrocopySMQGKLSKEKLATQNMMEELERKERRLQRLTKALLENQRQTEKMRSLTDQGQEADPLGQLTLLSKQPLFD
ParentalLAVIDQLFKEMSYCLFDLKALCSILNQRAQGKEPNLSLLLGIRSMNCSAEETENDQSQETLTKKLSDVCQ
...IDQLFKEMS.CLFDLKALCSIL.QRAQGKEP.LSLLLGIRSMNCSAEETEND.SQE.LTKKLSDVCQ
RetrocopyFTAIDQLFKEMSHCLFDLKALCSILHQRAQGKEPDLSLLLGIRSMNCSAEETENDHSQESLTKKLSDVCQ
ParentalLRKDIDELRTTISDRYAQDMGDNCVTQ
LRKDIDELRT.ISD.YAQD.GDNCVTQ
RetrocopyLRKDIDELRTSISDCYAQDIGDNCVTQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_3295 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000009073 1 retrocopy
retro_ogar_3295 ,


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