RetrogeneDB ID:

retro_ogar_336

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873520.1:31579390..31581389(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DHX8
Ensembl ID:ENSOGAG00000010418
Aliases:None
Description:DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Source:HGNC Symbol;Acc:2749]


Retrocopy-Parental alignment summary:






>retro_ogar_336
GGGAAGAAGACCCAGATGTCAATCACTGAGCAGAGGGAGAGCCTGCCCATCTACAAACTGAAGGAGCAGCTGGTTCAGGC
TGTCCGTAATAATCAGATCCTCACTGTTACTAGAGAGACAGGATTTGGTAAGACAATGGAGATCAACCAGTACCTGGAAG
AGGCTGGCTACACTTCCAGGGGCAAGATTGGGTGTACCCAGTCCAGAAGAGTGGCAGGCATGTTGGTGGCCAAAAGAGTA
TCAGAGAAGTTTGGTTGTTGCTTAGGCCAAGAGGTGGGCTACACCATTGGATTTGAAGACTGCAGTAGCCCCAAAATGGT
TATCAAGTACCTGACTGATGGGATGTTGCTCAGAGAGAGCCTGATTGACCCTGACCTTACTCAGTATGCCATCATCATGT
TGGATGAGGCACATGAGAAGACAATTCACACTGATGTGCTCTTTGGATTATTGAAACAGACAGTTCAGAAATGGCAGGAC
ATGAAGCTAATTGTCACCTCAGCCACCTTGGATGCAGTGAAGTTTTATCGGTACTTCTATAAAGATCCCATCTTCACTAT
CCCAGGTCGAACATATCCAGTGGAAATAATGTACACAAAGGAACTTGAGATAGATTATCAGGGTGCCAGCCTGATCATTG
TCATGCAGATCCATTTAACAGAACCACCAGGGGACATCCTGGTCTTCCTGCCTGGCCAGGAAAAGATTGATACAGCTTGT
GAGAGCCTGTATGAAAGAATGAAATCCCTGGCACTTGATGTTCCCAAGTTAATTATTCTCCCAGTGTGCTCTGCTCTTCC
CAGTGAGATGCAGACCCAAATTTTTGACCCAGCTCCACCAGGCAGCAAAAAGGTTGTGATTGCCACCAACATCACAGAGA
CATTGCTGATGATAGATAGCATCTATTATGTTGTGGACTCTGGATTTGTGAAGCAGAAAGTTTACAGTTCAAAGACGGGG
ATTGAAGAGCTCATGGTGATGCCTACTTCTCAGGCACAGGCAAAGCAATGAGCTGGCCGAGCTGGGAGAATGGGCCCAGG
GAAGTGTTACAGGCTATACCTGAAACATGCTTACCAATATGAAATGCTGACTACCAACGTGCTGGAAATCCAGAGAAGTA
ACTTAGCTAGCACAGTGCTGTTGCTCAAGGCCATGAGCATAATGACCTGCTGACCTTTGATTTCATGGATGTACCCCCAG
TGGAAACTTTGATCACAGCTATGGAGCAGCTGTACACACTGGGGGCCCTGGGTGATGAGGGCCTGTTCAGTCTTGTGGGC
TGCAGGATGGCAGAGTTCCCTCTGGAGCCAATTCTATGCAAAATACTGATCATGTCTCTGCATCTGAGCTGCAGTGAGGA
AATGCTGACCATTGTATCCATGCTGTCTGTGCAGAATGTCTTCTACAGACTCAAGGACAAACAAGTCCTTGCAGATCAAA
AGAAGACCAAGTTTCACCAGACTGAAGGGGACCACCTCACCCTGCTGGATGTGTACAACTCCTGGAGGAACAACAAGTTC
TGCAACCCATGGTGCCATGAGAACTTTATCCAGGCTCATTCCCTGTGCGGGGCCAGGACATTAGCAAGCAGATGCTAGGC
ATAATGGCCAGGCAGAGCTGGATGTTGTTTCCTGTGGTAAGTTCACAGGCCAAGTGCTGAAGGCCATTTGCAGTGGGTTC
ATCCATAATGCTGCCAAGAAGGACCCCCCATGAGGGTTACTGGACACTGATTGACCAACAGGTGGTCTACATCCACCTGT
CCAGTACTGTCTTCCACAGACAGCCAGAATGGGTGGTGTACCATGAGCTAGTGCTCACCATGAAGGAATACATGTGTGAT
ATCACCACCATTGACCCCTGGTGGCTTGTGGAGATTGCCCCAGTCTTTTTCAAGTTCTCCAACCCAACCAAGCTAAGCAA
GCAGAAGCAGCATCTTGAACCCTTGTGCAACTGCTACGAAGAGCCCAACGCCTGGAGAATATCCTGGGCCTTTCATCAG

ORF - retro_ogar_336 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.43 %
Parental protein coverage: 54.84 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRR
GKKTQMSI.EQRESLPIYKLKEQLVQAV..NQIL.V..ETG.GKT..I.QYL.EAGYTSRGKIGCTQ.RR
RetrocopyGKKTQMSITEQRESLPIYKLKEQLVQAVRNNQILTVTRETGFGKTMEINQYLEEAGYTSRGKIGCTQSRR
ParentalVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHER
VA.M.VAKRVSE.FGCCLGQEVGYTI.FEDC.SP..VIKY.TDGMLLRE.LIDPDLTQYAIIMLDEAHE.
RetrocopyVAGMLVAKRVSEKFGCCLGQEVGYTIGFEDCSSPKMVIKYLTDGMLLRESLIDPDLTQYAIIMLDEAHEK
ParentalTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDAS
TIHTDVLFGLLK.TVQK.QDMKLIVTSATLDAVKF..YFY..PIFTIPGRTYPVEI.YTKE.E.DY..AS
RetrocopyTIHTDVLFGLLKQTVQKWQDMKLIVTSATLDAVKFYRYFYKDPIFTIPGRTYPVEIMYTKELEIDYQGAS
ParentalLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPP
LI.VMQIHLTEPPGDILVFL.GQE.IDTACE.LYERMKSL..DVP.LIILPV.SALPSEMQT.IFDPAPP
RetrocopyLIIVMQIHLTEPPGDILVFLPGQEKIDTACESLYERMKSLALDVPKLIILPVCSALPSEMQTQIFDPAPP
ParentalGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCY
GS.KVVIATNI.ET.L.ID.IYYVVD.GFVKQKVY.SKTGI..L.V.P.SQAQAKQ.AGRAGR.GPGKCY
RetrocopyGSKKVVIATNITETLLMIDSIYYVVDSGFVKQKVYSSKTGIEELMVMPTSQAQAKQ*AGRAGRMGPGKCY
ParentalRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGI-NDLLSFDFMDAPPMETLITAMEQLYTLGALDD
RLY...AY..EMLTTNV.EIQR.NLASTVL.LKAM.I.NDLL.FDFMD.PP.ETLITAMEQLYTLGAL.D
RetrocopyRLYLKHAYQYEMLTTNVLEIQRSNLASTVLLLKAMSI<NDLLTFDFMDVPPVETLITAMEQLYTLGALGD
ParentalEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTE
EGL....G.RMAEFPLEP.LCK.LIMS.HL.CSEEMLTIVSMLSVQNVFYR.KDKQ.LADQKK.KFHQTE
RetrocopyEGLFSLVGCRMAEFPLEPILCKILIMSLHLSCSEEMLTIVSMLSVQNVFYRLKDKQVLADQKKTKFHQTE
ParentalGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSL-RRAQDIRKQMLGIMDRH-KLDVVSCGKSTVRVQKAI
GDHLTLL.VYNSW.NNKF.NPWC.ENFIQA.SL..R.QDI.KQMLGIM.R...LDVVSCGK.T..V.KAI
RetrocopyGDHLTLLDVYNSWRNNKFCNPWCHENFIQAHSL<VRGQDISKQMLGIMARQ<ELDVVSCGKFTGQVLKAI
ParentalCSGFFRNAAKKD-PQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF
CSGF..NAAKKD.P.EGY.TLIDQQVVYIH.SS..F.RQPEWVVYHELVLT.KEYM...TTIDP.WLVE.
RetrocopyCSGFIHNAAKKD>PHEGYWTLIDQQVVYIHLSSTVFHRQPEWVVYHELVLTMKEYMCDITTIDPWWLVEI
ParentalAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRR
AP.FFK.S.PTKLSKQK..Q.LEPL.N.YEEPNAWRIS.AF..
RetrocopyAPVFFKFSNPTKLSKQK--QHLEPLCNCYEEPNAWRISWAFHQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_336 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG000000000901 retrocopy
retro_mluc_1289,
Otolemur garnettii ENSOGAG00000010418 1 retrocopy
retro_ogar_336 ,


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