RetrogeneDB ID: retro_ogar_3460

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873856.1:51952..52735(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HSD17B7
• Ensembl ID: ENSOGAG00000010994
• Aliases: None
• Description: hydroxysteroid (17-beta) dehydrogenase 7 [Source:HGNC Symbol;Acc:5215]

Sequence

>retro_ogar_3460
ATGAGGAAGGTGGTTTTGATGACTGGAGCAAGCAGTGGCATTGGCCTGGCCCTCGTCAAGCGGCTGCTGGTGGAAAACGA
TGAGCTTCATCTGTGTTTGGCGTGCAGGAATGTGAACAAAGCGGAAGGTGTCCGAGCCACTCTGCTGGCCTCTCATCCCA
CCGCCGAGGTCACCATCGTGCAGGTAGATGTCAGCAACCTGCAGTCAGTATTCTGGGCCTCCAACGAACTTAAGCAAAGG
TTTCAGAGACAGGACTTTGTATATCTAAATGCTGAGATCATGCCTAATCCATAACTAAATATCAGAGCACTTTTCTCTGG
CCTCTTTTCAAGAAAAGTGATTCATATGTTCCCCACAGCTGAAGGACTGCTAACGCAGGACGACAACATCACTGCTGATG
GGTTCCAGGAGGTGTTTGAAACTAATGTCTTTGGCCACTTTATCCTGATTCGGGAACTGGAACCTCTCCTGTGTCACAGT
GACCATCCATCTTGGCTCATTTGGACATCATCTTGCAATGCAAGGAAATCTAATTTTGGCCTTGAGGACTTCCAGCACAG
CAAAGGCCAAGAACCCTTTGGCTCTTCCAAATATGCCCCTGACCTTCTGAATGTGGCTTTCAATAGGAACTTCAACCAGT
GGGATCTGTATTCCAGTGTGGTATGCCCAGGTACAGTACTGACCAATTTGACATTTGGAATTCTACTTCCTTTTGTATGG
ACGCTGTTGATACCCATCATATGGCTACTTTGCTTTTTTGCAAATGCTTTCACTTTGACACCA

Alignment

ORF - retro_ogar_3460 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.36 %
• Parental protein coverage: 78.14 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRKVVLITGASSGIGLALCKRLLVENDELHLCLACRNVSKAEGVRASLLASHPTAEVTVVQVDVSNLESI
          MRKVVL.TGASSGIGLAL.KRLLVENDELHLCLACRNV.KAEGVRA.LLASHPTAEVT.VQVDVSNL.S.
Retrocopy MRKVVLMTGASSGIGLALVKRLLVENDELHLCLACRNVNKAEGVRATLLASHPTAEVTIVQVDVSNLQSV

Parental  FRASSELKQRFKRLDFVYLNAGIMPNPQLNLRALFSGLFSRRFSVHITFCGSSGILLYDNRMT---LLKI
          F.AS.ELKQRF.R.DFVYLNA.IMPNP.LN.RALFSGLFSR....H..F....G.L..D...T.......
Retrocopy FWASNELKQRFQRQDFVYLNAEIMPNP*LNIRALFSGLFSRKV-IHM-FPTAEGLLTQDDNITADGFQEV

Parental  TNLSCLGHWAGLRNLGMCVCVSVPMCVWVWTSLENALRFYLTFTWTTQSTNSSSPGSLAHTCILLISIYL
          ......GH....R.L....C.S.......WTS..NA............S......GS......LL.....
Retrocopy FETNVFGHFILIRELEPLLCHSDHPSWLIWTSSCNARKSNFGLEDFQHSKGQEPFGSSKYAPDLL-NVAF

Parental  DRVIIHAGLYSSVVCPGTVLTNLTYGILPPFVWMLLIPIIWLLRFFANAFTLTP
          .R......LYSSVVCPGTVLTNLT.GIL.PFVW.LLIPIIWLL.FFANAFTLTP
Retrocopy NRNFNQWDLYSSVVCPGTVLTNLTFGILLPFVWTLLIPIIWLLCFFANAFTLTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3460 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000011264	1 retrocopy	retro_ggor_361,
Otolemur garnettii	ENSOGAG00000010994	1 retrocopy	retro_ogar_3460 ,