RetrogeneDB ID: retro_ogar_45

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:28768319..28769624(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000033848
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CTBP2
• Ensembl ID: ENSOGAG00000024152
• Aliases: None
• Description: C-terminal binding protein 2 [Source:HGNC Symbol;Acc:2495]

Sequence

>retro_ogar_45
ATGGCCCTTGTGGATAATCACAAAGTCAAGAGACAGTGCTTGAACAGAATTTGTGAAGGTAACCGCCCCCAGATCATGAA
CGGCCCCCTGCACCCCCGCCCCCTGGTAGCGCTGTTGGACGGCCGTGACTGCACAGTGGAGAGGCTGATCCTGAAGGACC
TGGCCACCATGGCCTTCTGTGACGCCCAGTCTACTCAGGAGATCCACGAGAAGGTGTTAAACGAGGCTGTGGGCGCCATG
ATGTACCACACCATCACCCTCACCAGGCAGGATCTGGAGAAGTTCAAGGCCCTGAGAGTGATCGTGCGGATAGGCAGTGG
CTACGATAACGTGGACATCAAGGCTGCTGGTGAGCTCGGGATCGCTGTGTGCAACATCCCCTCTGCAGCAGTGGAAGAGA
CGGCCGATTCCACCATCTGCCACATTCTCAACCTATACCGGAGAAACACATGGCTGTACCAGGAACTGCGGGAGGGCATG
CGGGTACAGAGTGTGGAGCAGATCCGAGAGGTGGCCTCGGGAGCAGCACGCATCCGCGGGGAGACACTGGGCCTCGTCGG
CTTTGGTCGCACGGGGCAAGCGGTTGCTGTTCGAGCCAAGGCCTTTGGATTTAGCGTCATATTTTATGACCCCTACTTGC
AAGATGGGATAGAGCGGCCCCTGGGAGTGCAGAGGGTCTACACTCTACAGGACTTGCTGTATGAGAGCGATTGTGTCTCC
TTGCACTGCAGTCTCAGTGAACATAACCATCACCTCATCAATGACTTTACTATAAAGCAGATGAGGCAAGGAGCATTCCT
TGTGAATGTGGCCCATGGTAGCCTGGTGGATGAGAAAGCCTTAGCCCAGGCCCTCAAGGAGGGCAGGATACAAGGGGCGG
CCCTGGATGTGCATGAATCCGAGCCCTTTAGCTTTGCTCAGGGTCCATTGAAGGATGCACCAAACCTCATCTGTACTCCC
CACACAGCCTGGTACAGTGAGCAGGCCTCACTGGAAATGAGGGAGGCTGCTGCCATGGAGATCTGGCGGGCAATCACAGG
TCGCATCCCAGAAAGCTTAGGAAACTGTGTGAACAAGGAATTCTTTGCCAGGTCAGCAATAGACCAACAAGCAATTCATC
CGGAGCTCAGTGGTGCCACATACAGATACCCACCAGGTATTTTGGGCGTGGTTCCAGGACGACTGCCTGCAGCCATGGAA
GGGATCATCCCTGGAGGCATTCCAGTGACTGACGACCTCCCTTCAGTGGCACACCCTTCCCAAGTGCCCTCTTCCAACCA
GCCCACAAAACTCAGGGACAATTGA

Alignment

ORF - retro_ogar_45 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.87 %
• Parental protein coverage: 98.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHE
          MALVD.HKVKRQ.L.RICEG.RPQIMNGPLHPRPLVALLDGRDCTVE..ILKDLAT.AFCDAQSTQEIHE
Retrocopy MALVDNHKVKRQCLNRICEGNRPQIMNGPLHPRPLVALLDGRDCTVERLILKDLATMAFCDAQSTQEIHE

Parental  KVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC
          KVLNEAVGAMMYHTITLTR.DLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC
Retrocopy KVLNEAVGAMMYHTITLTRQDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC

Parental  HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYD
          HILNLYRRNTWLYQ.LREG.RVQSVEQIREVASGAARIRGETLGL.GFGRTGQAVAVRAKAFGFSVIFYD
Retrocopy HILNLYRRNTWLYQELREGMRVQSVEQIREVASGAARIRGETLGLVGFGRTGQAVAVRAKAFGFSVIFYD

Parental  PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKA
          PYLQDGIER.LGVQRVYTLQDLLY.SDCVSLHC.L.EHNHHLINDFTIKQMRQGAFLVN.A.G.LVDEKA
Retrocopy PYLQDGIERPLGVQRVYTLQDLLYESDCVSLHCSLSEHNHHLINDFTIKQMRQGAFLVNVAHGSLVDEKA

Parental  LAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIP
          LAQALKEGRI.GAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAA.EI.RAITGRIP
Retrocopy LAQALKEGRIQGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAAMEIWRAITGRIP

Parental  ESLRNCVNKEFFVTSATWSVIDQQAIHPELNGATYRYPPGLVGVAPGGLPAAMEGIIPGGIPVTHNLPTV
          ESL.NCVNKEFF..SA....IDQQAIHPEL.GATYRYPPG..GV.PG.LPAAMEGIIPGGIPVT..LP.V
Retrocopy ESLGNCVNKEFFARSA----IDQQAIHPELSGATYRYPPGILGVVPGRLPAAMEGIIPGGIPVTDDLPSV

Parental  AHPSQAPSPNQPTKHGDN
          AHPSQ.PS.NQPTK..DN
Retrocopy AHPSQVPSSNQPTKLRDN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_45 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012775	1 retrocopy	retro_cfam_1868,
Callithrix jacchus	ENSCJAG00000012539	2 retrocopies	retro_cjac_1866, retro_cjac_2528,
Cavia porcellus	ENSCPOG00000008397	1 retrocopy	retro_cpor_1525,
Oryctolagus cuniculus	ENSOCUG00000007076	1 retrocopy	retro_ocun_378,
Otolemur garnettii	ENSOGAG00000024152	2 retrocopies	retro_ogar_1393, retro_ogar_45 ,