RetrogeneDB ID: retro_ogar_48

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873749.1:261444..262824(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000033003
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000004643
• Aliases: None
• Description: None

Sequence

>retro_ogar_48
ATGAAGGAAGAGAAGGAGAACAAACCCAAGAGTAAGCGAGTAACCCTGCCGCCGCCCGCAGTGGCCTCAAGCAGCGGCAA
TGGGACCTCAGGCGATGGTGCCAAAGGAGAAGATAAACATGATCGAAGCAAGGAGAAGAAAGAGGCTCTGAGCAAGGTGG
TGATTCGAAGATTACCTCCCACCATGACGAAGGAGCAGCTTCTAAAACATCTCCAACCTATGCCTGAACATGATTATTTT
GAATTTTTTTCTAATGATACGAGTCTGTATCCTCATTTGTATGCCAGAGCGTACATCAACTTTAAAAACCAAGAAGACAT
TCTTTTGTTCCGGGATCGCTTTGATGGTTATGTGTTCGTTGACAATAAAGGTCAAGAGTATCCTGCTGTCGTAGAATTTG
CACCTTTTCAAAAAGCGGCGAAGAAGAAGACCAAGAAGAGAGACTCCAAAGTTGGGACTATCAAGGATGATCCAGACTAT
AGAAAATTTTTGGAAGGTTACGCCACCGATAATGAGAAGAGGGTAACAGCTACACCAGAGACGATGCTGGAGGAAATAGA
AGCAAGGAAGAGAGACCTAATAAGTAAAAAGACAACTCCGCTTTTGAGCTTTCTGAAGAATAAGCAGCGAATCCGTGAAG
AAAAGAGAGAAGAAAGAAGGAGGCGCGAAATAGAACGAAAGAGACAAAGAGAAGAGGAGAGACGAAAGTGGAAAGAAGAA
GAGAAGCGTAAAAGGAAAGAGATGGAGAAACTCAAGAAGACAGACCGAGTTCCAGAAGTGGAAAAAATAAAGGATGAACC
AAAGATTAAGCTGCTGAAGAAGCCGGAAAAAGGAGACGGAAAGGAGTTGGACAAAGGAGAAAAAACCAAGCAACTGGACA
AAGAGAACGTGAGTGATGAAAGAGCCGGTGGGCAGAGTGGTGCATTTCCCAAGAGATCTGATAGTGAGCTGAAAGATGAG
AAGCCAAAGAGAGCTGAAGAGGAGAGTGGCAAAAGTTTCAAGGAGAAGGAACGGGATTATGAACGAGAACAGGAGCGCAT
ACTTCGAGAAAAAGAGAGGCAGAAGCGGCAAGAGGAAGAGCGCCGTCGGCAGAAGGAGCGTTATGAGAAAGAGAAGATGT
TTAAAAGAAAGGAAGAAGAAATGAAAAAGGAGAAAGAAGCACTTCAGGATAAAGGAAAGAAGAACGAAAGCAAGGAATCA
ACTGGCAGCTCAGACAAAACCGACAAGAAAGAGGAAGTGGTTGTTAAGAAAGAGCGCATAAGAAACAAGGATCGCCCTTC
AATGCTGCTTTACCAAGCAGGAGCTAGAAGCCGAAACCGACCCTGTCCTCCTGCTGACAGCGCCAAGTCTGGGGACGCAG
CAGTAGGAAAAAAAGCAGAA

Alignment

ORF - retro_ogar_48 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.13 %
• Parental protein coverage: 97.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MKEEKEHRPKEKRVTLLTPPGASCSGSGTSGDSAKGEDKQDRNKEKKEALSKVVIRRLPPTLTKEQLQEH
          MKEEKE..PK.KRVTL..P..AS.SG.GTSGD.AKGEDK.DR.KEKKEALSKVVIRRLPPT.TKEQL..H
Retrocopy MKEEKENKPKSKRVTLPPPAVASSSGNGTSGDGAKGEDKHDRSKEKKEALSKVVIRRLPPTMTKEQLLKH

Parental  LQPMPEHDYFEFFSNDTSLYPHMYARAYINFRNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAA
          LQPMPEHDYFEFFSNDTSLYPH.YARAYINF.NQEDI.LFRDRFDGYVF.DNKGQEYPA.VEFAPFQKAA
Retrocopy LQPMPEHDYFEFFSNDTSLYPHLYARAYINFKNQEDILLFRDRFDGYVFVDNKGQEYPAVVEFAPFQKAA

Parental  KKKTKKRDTKVGTIDDDPEYRKFLESYATDNEK-MTSTPETLLEEIEAKNRELIAKKTTPLLSFLKNKQR
          KKKTKKRD.KVGTI.DDP.YRKFLE.YATDNEK..T.TPET.LEEIEA..R.LI.KKTTPLLSFLKNKQR
Retrocopy KKKTKKRDSKVGTIKDDPDYRKFLEGYATDNEKRVTATPETMLEEIEARKRDLISKKTTPLLSFLKNKQR

Parental  MREEKREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRVPEREKIKDEPKIKLLKKPEKGDE
          .REEKREERRRREIERKRQREEERRKWKEEEKRKRK..EKLKK.DRVPE.EKIKDEPKIKLLKKPEKGD.
Retrocopy IREEKREERRRREIERKRQREEERRKWKEEEKRKRKEMEKLKKTDRVPEVEKIKDEPKIKLLKKPEKGDG

Parental  KELDKREKTKKLDKENLNDERASGQSCTLPKRSDSELKDEKPKRLEEESGRDYRERERDYEREQERILRE
          KELDK.EKTK.LDKEN..DERA.GQS...PKRSDSELKDEKPKR.EEESG....E.ERDYEREQERILRE
Retrocopy KELDKGEKTKQLDKENVSDERAGGQSGAFPKRSDSELKDEKPKRAEEESGKSFKEKERDYEREQERILRE

Parental  RERLKRQEEERRRQKERYEKERIFKRKEEEMKKEKEALRDKGKKNESTESIGSSDKTEKKEE-VVKRDRI
          .ER.KRQEEERRRQKERYEKE..FKRKEEEMKKEKEAL.DKGKKNES.ES.GSSDKT.KKEE.VVK..RI
Retrocopy KERQKRQEEERRRQKERYEKEKMFKRKEEEMKKEKEALQDKGKKNESKESTGSSDKTDKKEEVVVKKERI

Parental  RNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAIEKKQE
          RNKDRP.M.LYQ.GARSRNR.CPP.DS.KSGD.A..KK.E
Retrocopy RNKDRPSMLLYQAGARSRNRPCPPADSAKSGDAAVGKKAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_48 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000004643	1 retrocopy	retro_ogar_48 ,