RetrogeneDB ID: retro_ogar_520

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873522.1:33719827..33720454(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000028329
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ZFPL1
• Ensembl ID: ENSOGAG00000014990
• Aliases: None
• Description: zinc finger protein-like 1 [Source:HGNC Symbol;Acc:12868]

Sequence

>retro_ogar_520
ATGGGGCTTTGCAAGTGCCCCAAGAGGAAAGTGACCGACCTGTTTTGCTTTGAACACCGGGTCAACGTCTGCGAGCACTG
CCTCATAGCCAATCACACCAAGTGCATCGTCCAGTCCTACCTGAAGTGGCTCCAAGATAGCGAATACAACCCTAATTGCC
ATCTATGCAACATACCCCTGGCCAGCAGAGAAACCACCCGCCCCGACAGCTATGATATCTTTCACTGGGGATGCATCAAT
GAACGTGCCACCCAGCTACCCAAAAACACCACATCTGCTGGCTACCAGTGCCCTAGCTGTAGTGGCCCCATCTTTCCCCC
AACCAACCTGGATGGTCCTGTGGCTTCTGCATTGAGAGAGAAGCTGACCACAGTCAACTGGGCCTGGGCAGGACTGGGCC
TCCCTCTGATTGATGAAGTGGTAAGCCCAGAGGCTGAGCCCCTCGACACTTCTGACTTCTCTGACTGGTCAAGTTTTAAT
GCCAGCAGTACCTCCAGAGCAGAAGAGATAGACAGCACCTCTGCTGACCCAACCTTCTACAGCCAGGCCCCACGGCCCCC
TGCTTCTCCGGGCCGGACTGAGCAGCACACAGTGATCCACATGGGTAGTTCTGAACCCTTGACTCAT

Alignment

ORF - retro_ogar_520 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.26 %
• Parental protein coverage: 64.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGLCKCPKRKVTSLFCFEHRVNVCEHCLIANHTKCIVQSYLKWLQDSEYNPNCRLCNIPLASRETTRLVC
          MGLCKCPKRKVT.LFCFEHRVNVCEHCLIANHTKCIVQSYLKWLQDSEYNPNC.LCNIPLASRETTR...
Retrocopy MGLCKCPKRKVTDLFCFEHRVNVCEHCLIANHTKCIVQSYLKWLQDSEYNPNCHLCNIPLASRETTRPDS

Parental  YDIFHWGCINERAAQLPQNTAPAGYQCPSCSGPIFPPTNLDGPVASALREKLATVNWARAGLGLPLIDEV
          YDIFHWGCINERA.QLP.NT..AGYQCPSCSGPIFPPTNLDGPVASALREKL.TVNWA.AGLGLPLIDEV
Retrocopy YDIFHWGCINERATQLPKNTTSAGYQCPSCSGPIFPPTNLDGPVASALREKLTTVNWAWAGLGLPLIDEV

Parental  VSPEAEPLDTSDFSDWSSFNASSTSRAEEIDSTSPDPTFYSQAPRPPASPGRTEQHTVIHMGSSEPLTH
          VSPEAEPLDTSDFSDWSSFNASSTSRAEEIDSTS.DPTFYSQAPRPPASPGRTEQHTVIHMGSSEPLTH
Retrocopy VSPEAEPLDTSDFSDWSSFNASSTSRAEEIDSTSADPTFYSQAPRPPASPGRTEQHTVIHMGSSEPLTH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_520 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000014990	1 retrocopy	retro_ogar_520 ,