RetrogeneDB ID: retro_ogar_637

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:35209693..35210148(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NMNAT1
• Ensembl ID: ENSOGAG00000033037
• Aliases: None
• Description: nicotinamide nucleotide adenylyltransferase 1 [Source:HGNC Symbol;Acc:17877]

Sequence

>retro_ogar_637
ATGGAAAATTCAGAGAAGACAGAAGTGGTTCTCCTTGCTTGTGGTTCCTTTAATCCTATCACCAACATCCAGCTCAGGTT
CTTTGAACTGGCCATGGACTAAATGAACAGAACATGAAAATACAGAGTGATCAAAGGCATAATTTCTCCTGTTGGTGTTG
CATGTGATAAGAAAGAGCTCATCCCTGCCCATCACTGAGTTATAGTAGAACTTGCCATCAGGAATTCAAAGTCGCTGGAA
GTTGATACGGGGGAAAGTCTTCAGAAGGAGTGGCCAGAGACTGTTGAGGTGCCAAGACACCATCAAGAGAAACTGGAGGC
CAGTAACTGTGACCACTCACAGAACTCACCTGTGCTAAGAGGCCTGGATGGAAGAGGAAGTGGACTGACTCAAGGCAAGA
TTCTAGACAAAAGAAATCCTTAGATCCCAAACCAAAAGATATGCTGACAGTAAGG

Alignment

ORF - retro_ogar_637 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.52 %
• Parental protein coverage: 54.64 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGKYRVIKGIISPVGDAYNKKELIPAHHRVIMA
          MENSEKTEVVLLACGSFNPITN..LR.FELA.D.MN.T.KYRVIKGIISPVG.A..KKELIPAHH.VI..
Retrocopy MENSEKTEVVLLACGSFNPITNIQLRFFELAMD*MNRT*KYRVIKGIISPVGVACDKKELIPAHH*VIV-

Parental  ELATRNSKWLEVDTWESLQKDWTETVKVLRHHQEKLEASNCDHSQNSPVL-ERPGRKRKWTEPRQDSSQK
          ELA.RNSK.LEVDT.ESLQK.W.ETV.V.RHHQEKLEASNCDHSQNSPVL..RPG.KRKWT..RQDS.QK
Retrocopy ELAIRNSKSLEVDTGESLQKEWPETVEVPRHHQEKLEASNCDHSQNSPVL<KRPGWKRKWTDSRQDSRQK

Parental  KSLDPKPKDVPKVK
          KSLDPKPKD...V.
Retrocopy KSLDPKPKDMLTVR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_637 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001361	2 retrocopies	retro_btau_1153, retro_btau_1654,
Callithrix jacchus	ENSCJAG00000005483	1 retrocopy	retro_cjac_1690,
Homo sapiens	ENSG00000173614	3 retrocopies	retro_hsap_247, retro_hsap_2740, retro_hsap_2989,
Macaca mulatta	ENSMMUG00000005863	2 retrocopies	retro_mmul_1488, retro_mmul_446,
Nomascus leucogenys	ENSNLEG00000009375	2 retrocopies	retro_nleu_1072, retro_nleu_741,
Oryctolagus cuniculus	ENSOCUG00000023212	1 retrocopy	retro_ocun_1243,
Otolemur garnettii	ENSOGAG00000033037	2 retrocopies	retro_ogar_1088, retro_ogar_637 ,