RetrogeneDB ID: retro_ogar_819

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:1442661..1444164(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000017043
• Aliases: None
• Description: None

Sequence

>retro_ogar_819
GAGAGAGAATCTTTCCCAGAAATGAGCAGCTTCAGTGACAGGAGAGTAGTTGTAATGCCTCCTAAGAAACACAGTGAGAA
GCAATCTAGTGACCGAAGGACAGTCATTTGCAGTAAAAGGTCTCCACCCCAAGAATATCTGGATGACTATAACTTCCATT
CACTAACCCAAATGCCTACAGGAAGGAAGGTGGTGTATGAGCTCTCCTCTTCAGAAAGTGACAGGTCTGATACTGAAGAG
ATCTCTACAGTCAGATCCTCTCACATGGAGTCACTCTCAGTCAATCTCCCTGTTGTCTCAGAGCCTTCATCTTTCACCAA
GGACTATGACATATATCAACCCAGCTTGTCCGATAGTCCTTGCTATGATTCCACCAGCCATTTGCCCAGTAGTACCCAGG
TTTCTTATTACCCTTCCCTGGCCAGCAGCACCACCACCACCACATTCCAGGCTAGGAAGGGCAGCCGGAAATTCCCAAGT
CATTACTCCTATAATTATACACGGAGCTCCAAAGACATGTCCAGAGATGTGGAAGTGACAGAAGGCTCATCCCTCGATTT
TTGTTCATTGCATGTCTCCAAAAATTCAGAAGCAGAGATGAAGAAAGGAACATATCCAGAGGAGATACCACCACCTCCTT
CTAGTGGATATGCGTCTGGCTTCACGCCAAGAAGCCACTGGCACCCAAGCCTAGAGCGGGGTTTCATTGATTCCCACTGT
CACTTGGACATGCTCTTTACCAAACTGTCTTTCAAAGGGACTTTTACCGAGTTCAAAGAAATGTATAGCCAATCTTTCCC
TAGGGAATTTCAGGGCTGCATCTCCAATTTCTGTGATCCTCGTAGTCTAATGGATGGCCTGTGGGAAGATCTGTTGAAAG
AGGATCTGGTCTGGGGGGCCTTTGGCTGTCACCCTCATTTTGCACGTTACTACAATGCACATCAAGAAAGAAATATTTTG
CAAGCCTTACGGCACCCCAAGGCTGTAGCATTCGGAGAAATGGGCTTGGATTACTCTTACAAGTGCACCACACCTATCAG
AGAGCAGCAGAAGATATTTCAAAGGCAACTGCAGCTGGCTGTGTCTCTAAAGAAGCCCTTAGTGATTCATTGCCGGGAAG
CTGACGAAGATCTGCTGTGCATCTTGAAAAAGTATGTGCCCTCTGACTACAAGATCCATAGGCATTGCTTCACTGGAAGT
TACCCAGTCATTGAGCCCCTCCTGAAGCACTTTCCCAACATGTCTGTGGGCTTCACCGCAGTCCTGACTTACTCTTCTGC
CTGGGAGGTCCGAGCAGCTCTGAAAACGATCCCACTGGAGAGAATTGTTGTGGAAACTGATGCTCCCTACTTCCTTCCTC
GTTCGATTTCCAAAAGCTATTGCCAATATTCCCACCCGGGCCTGGCCCTGAATACAGTGAGAGAGATTGCCAGAATCAAA
AATCTGCCACTCTGGAATACCTTAGGCACCTTGCGTGAGAATACCACTCAACTCTATGGTCTT

Alignment

ORF - retro_ogar_819 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.61 %
• Parental protein coverage: 63.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EEKTGPERNSFCHRRVVMDPEEKSSEEPLEPHGDRRTVI-DKHSPPLEFLDDSDSHLEIQKHKDREVVIE
          E....PE..SF..RRVV..P..K.SE.......DRRTVI..K.SPP.E.LDD...H...Q....R.VV.E
Retrocopy ERESFPEMSSFSDRRVVVMPPKKHSEKQ---SSDRRTVICSKRSPPQEYLDDYNFHSLTQMPTGRKVVYE

Parental  RLSSGSDWSDVDEISTVRFSQEEPVSLKLSAAPEPPSFTTDYVMYPPHLYSSPWCDYASYWTGSPKPSGY
          ..SS.SD.SD..EISTVR.S..E..S..L....EP.SFT.DY..Y.P.L..SP..D..S....S...S.Y
Retrocopy LSSSESDRSDTEEISTVRSSHMESLSVNLPVVSEPSSFTKDYDIYQPSLSDSPCYDSTSHLPSSTQVSYY

Parental  PSMGSSSTDIA-QAGRSSRSLLSDYSSNSTVSSQNTSRDFEATEEGRSQNSRSFPFSRSLEEEVREKRTF
          PS..SS.T....QA...SR...S.YS.N.T.SS...SRD.E.TE.G.S....S...S...E.E...K.T.
Retrocopy PSLASSTTTTTFQARKGSRKFPSHYSYNYTRSSKDMSRDVEVTE-GSSLDFCSLHVSKNSEAEMK-KGTY

Parental  QEEMPPRHCEGHIPGSLPRSHWEPSLEEGFIDTHCHLDMLYSKLSFKGTFTKFRKIYSSSFPKEFQGCIS
          .EE.PP....G...G..PRSHW.PSLE.GFID.HCHLDML..KLSFKGTFT.F...YS.SFP.EFQGCIS
Retrocopy PEEIPPPPSSGYASGFTPRSHWHPSLERGFIDSHCHLDMLFTKLSFKGTFTEFKEMYSQSFPREFQGCIS

Parental  DFCDPRTLTDCLWEELLKEDLVWGAFGCHPHFARYYNESQERNLLQALRHPKAVAFGEMGLDYSYKCTTP
          .FCDPR.L.D.LWE.LLKEDLVWGAFGCHPHFARYYN..QERN.LQALRHPKAVAFGEMGLDYSYKCTTP
Retrocopy NFCDPRSLMDGLWEDLLKEDLVWGAFGCHPHFARYYNAHQERNILQALRHPKAVAFGEMGLDYSYKCTTP

Parental  VPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLDIMKKFVPSDYKIHRHCFTGSYPVIEPLLKYFPNMS
          ..EQ.K.F.RQLQLAVSLKKPLVIHCREADEDLL.I.KK.VPSDYKIHRHCFTGSYPVIEPLLK.FPNMS
Retrocopy IREQQKIFQRQLQLAVSLKKPLVIHCREADEDLLCILKKYVPSDYKIHRHCFTGSYPVIEPLLKHFPNMS

Parental  VGFTAVLTYSSAWEAREALKKIPLDRIIVETDAPYFLPRQVPKSLCQYAHPGLALHTVREIARVKDQPLS
          VGFTAVLTYSSAWE.R.ALK.IPL.RI.VETDAPYFLPR...KS.CQY.HPGLAL.TVREIAR.K..PL.
Retrocopy VGFTAVLTYSSAWEVRAALKTIPLERIVVETDAPYFLPRSISKSYCQYSHPGLALNTVREIARIKNLPLW

Parental  RTLAALRENTSRLYNL
          .TL..LRENT..LY.L
Retrocopy NTLGTLRENTTQLYGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_819 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016012	1 retrocopy	retro_amel_46,
Otolemur garnettii	ENSOGAG00000017043	1 retrocopy	retro_ogar_819 ,