RetrogeneDB ID: retro_ogar_822

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:15032253..15033113(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DRG2
• Ensembl ID: ENSOGAG00000033863
• Aliases: None
• Description: developmentally regulated GTP binding protein 2 [Source:HGNC Symbol;Acc:3030]

Sequence

>retro_ogar_822
TTAGCTAAGATCGCAGAGATAGAAGCCGAGATGGCTTGGACTCAGAAGGACAAAGCCACAGCACATCACCTAGGGCTACT
TAAGGGCCGCCTTGCTGAACTCCGGCGAGAACTCATTCCTCCAAAAGGCAGTGGTGGTGGTGGAACAGGAGAAGGTTTTG
ATGTCGCCAAGACAGGTGATGCTTGAATTGGGTTCATGAGTTTTCCCTCTGTGGGGAATTCACCACTGCTAAGTAACCTG
GCAGGAGTGTATTCCAAGGTGGCAGCCTATGAATTCACTACTCTGACCACTGTGCCTGATGTCATCAGATACAAAGGTGC
CAAGATCCAGCTCCTGGATCTCCCAGGTATCATTGAAGGTGCCAAGGATGGGAAAGGTAGAGGCCGTCAAGTCATTGCAG
TGGCCCGAACCTGTAACTTGATCCTGATTGTTCTGGATGTCCCAAAACCCTTGAGACACAAGAAAGTAATTGAAAATGAG
CTGGAAGAATTTGGCATTCACTAGAACAGCAAACCCCCATATTGGTTTTAAGAAGGACAGGGGGGGGGGATTAATCTCAC
AGCCACTTGCCCTCAGAGTGAGCTGGATGCTGAAACTGTGAAGAGCATTTTGTCTGAATACAAAATTCATAATGCTGACG
TGACTCTTATAGCGATGCCACAGCTGATGACCTCATTGACGTGGTGGGAGGAAACAGAGTTTATATCCCCTGTATCTATG
TGTTAAATAAGATAGACCAGATCTCCATTGAGGAATTGGATATTATCTATAAGCCACCTCATTGTGTACCTATCTCTGCC
CATTTTCTTGTTGGAAAAGATCTGGGACTATCTGAAACTAGTGAGAATTTACACCAAACC

Alignment

ORF - retro_ogar_822 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.17 %
• Parental protein coverage: 78.85 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASS-KGEGFDVMKSGDARVALIGFPS
          L.KI.EIE.E.A.TQK.KAT..HLGLLK..LA..R..L..P..S.....GEGFDV.K.GDA......FPS
Retrocopy LAKIAEIEAEMAWTQKDKATAHHLGLLKGRLAELRRELIPPKGSGGGGTGEGFDVAKTGDA*IGFMSFPS

Parental  VGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADV
          VG.S..LS......S..A.YEFTTLT..P.VI.YKGA.IQLLDLPGIIEGA..GKGRGRQVIAVART...
Retrocopy VGNSPLLSNLAGVYSKVAAYEFTTLTTVPDVIRYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNL

Parental  VIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKI
          ....LD..K........E.ELE..GI..N..KP...F.......I....T..........V..IL.EYKI
Retrocopy ILIVLDVPKPLRHKKVIENELEEFGIH*NS-KPPYWF*EGXXXXINLTATCPQSELDAETVKSILSEYKI

Parental  FNAEVLF-REDCSPDEFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLE
          .NA.V.....D...D..IDV..GNRVY.PC.YV.NKIDQIS.EE.D.....P..V.IS.......D..L.
Retrocopy HNADVTL<YSDATADDLIDVVGGNRVYIPCIYVLNKIDQISIEELDIIYKPPHCVPISAHFLVGKDLGLS

Parental  MLWEYLALT
          ...E.L..T
Retrocopy ETSENLHQT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_822 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000014953	1 retrocopy	retro_cjac_2661,
Mus musculus	ENSMUSG00000020537	1 retrocopy	retro_mmus_974,
Otolemur garnettii	ENSOGAG00000033863	1 retrocopy	retro_ogar_822 ,