RetrogeneDB ID:

retro_ogar_83

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873629.1:3800644..3803230(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027107
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000004233
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_83
ATGGAGACGCTGAGACCCCAATCTCTAACTAAGCTGTTTCAGTCGCCTCGTCGTCCTGACCTTGGCACTGCTGGAAAACC
AATTCGACTGTTAGCCAATCATTTTCGGATTCATGTTCCTAATATAGATGTGTATCACTATGTGGTGGATATTAAACCAG
AAAAACGGCCCCGCAGAGTCAACAGGGAGGTAATAGATGCAATGGTGCGGCACTTCAAGATGCAGATATTTGGTGACCGG
CAACCTGGCTATGACGGCAAAAGAAATATGTACACGGCACACCCACTGCCAATTGGACGGGATAGGGTTGATATTGAGGT
GACCCTTCCAGGCGAGTGTAAAGACCAAACCTTTAAAGTGTCTGTTCAGTGGATGTCGGTTATAAGCTTTCAGTTGCTTT
TAGAAGCTTTGGCTGGGCACTTGAATGAAATCCCAAATGATTCAGTCCAAGCACTTGATATTATCACAAGGCACCTTCCC
TCTATGAGGTACACCCCAGTGGGCTGTTCCTTTTTCTCTCCCCCTGAAGGTTACTACCACCCTCTGGGAGGGGGCAGGGA
GATTTGGTTTGGCTTTCATCAGTCTGTGAAACCTGCTATGTGGAATATGATGCTCAATATTGATATATCTGCGACTGCTT
TCTACCGGGCTCAGCCTGTCATTGAGTTCATGTGTGAGGTTTTAGACATTCAGAACATCAATGAACAGACCAGACCTCTA
ACAGACTCCCAACGTGTCAAATTTACCAAAGAAGTCAAAGGTCTGAAAGTTGAGGTGACCCACTGTGGGCAGGTGAAACG
AAAATACCGAGTTTGTAATGTGACCAAACGATCAGCCAGTCATCAAACTTTTCCTTTGCATCTAGAAAATGGTCAAACTA
TAGACTGTACAGTAGCTCAATATTTTAAGCAAAAATACAGTCTTCAGTTGATATACCCCCATCTTCCGTGTCTCCAAGTG
GGACAAGAACAAAAGCATACCTACTTACCAATTGAGGTCTGCAAAATTGTGGCAGGACAGCGATGTATAAAGAAGCTCAC
AGACAGTCAGACCTCCACAATGATCAAAGCCACAGCAAGAGCTGCTCCTGACAGACAGGAAGAAATCAGTAGACTAGTGA
AGGGCAACAGCATAATGGGTGGACCTGATCCATACCTTAAAGAATTTGGCATTGTTGTACATGATGAAATGACAGAACTC
ACAGGCAGGGTACTTCCAGCACCAATGCTGCAATACGGAGGCCGGAATAAAGCAGTGGCCACACCCAACCAGGGTGTCTG
GGACATGCGAGGAAAGCAGTTTTATGCTGGCATTGAAATTAAAGTTTGGGCAGTTGCTTGTTTTGTGCCTCAGAAACAAT
GTAGGGAAAATTTACTAAAGAATTTCACTGACCAGCTGCGTAGAATCTCTAAGGATGCAGGAATGCCCATCTATGGCCAT
CCATGTTTCTGCAAATATGCCCAAGGTGCAGATAGCGTGCAGCCCATGTTTCAACATCTGAAAACGACATATGCAGGCCT
ACAGCTAATAGTGGTTATCTTGCCTGGAAAGACACCAGTATATGCGGAGGTGAAACGTGTTGGCGATACCCTTCTAGGTA
TAGCCACACAATGTGTCCAGGTAAAAAATGTAGTGAAGACCTCACCTCAAACTCTTTCCAACCTTTGCCTGAAGATAAAC
GCAAAGCTTGGAGGAATTAACAATGTGCTTGTACCTCATCAGAGGCCCTCGGTATTCCAGCAGCCTGTCATCTTCCTGGG
AGCCGATGTCACACACCCCCCAGCAGGGGATGGGAAGAAGCCCTCCATTGCTGCTGTGGTTGGCAGTATGGATGCCCACC
CCAGCCGGTATTGTGCCACAGTTCGGTTGCAGACTTACCACCAGGAGATCCCCGAGGAGCTTCTCTACAGTCGAGAGGTC
ATTCAGGACCTTACTAACATGGTTCGGGAACTACTGATCCAGTTCTACAAATCCACCCGCTTCAAACCCACTCGGATCAT
CTATTACCGTGGAGGGGTATCTGAGGGACAAATGAGACTGGTAGCTTGGCCAGAACTAATAGCAATTCGAAAGGCATGTA
TTAGCTTGGAGGAAGATTACCGACCAGGAATAACATACATTATGGTGCAGAAAAGACATTACACAAGACTCTTCTGTGCA
GATAAAACAGAAAGGGTGGGGAGAAGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCATCACACATCCATGTGA
GTTTGACTTTTACCTCTGTAGTCATACAGGAATTCAGGGAACCAGCCGTCCTTCACATTACCAGGTCTTGTGGGATGACA
ACTGCTTCACTGCAGATGAGCTCCAGCTACTGACTTACCAGCTGTGTCATACCTATGTGAGGTGCACACGCTCAGTCTCT
ATTCCAGCCCCTGCATATTATGCCCGGCTCGTAGCATTTAGGGCACGGTACCATCTGGTGGATAAAGATCATGACAGTGC
AGAAGGCAGTCATGTGTCAGGACAGAGTGACAGCCGGGATCCTCAGGCCTTGGCTAAGGCTGTGCAGATCCACCATGATA
CCCAGCGCACGATGTATTTTGCCTGA

ORF - retro_ogar_83 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.21 %
Parental protein coverage: 72.5 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQL
EV.D.MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVD.EVTLPGE.KDQTFKVSVQW.SV.S.QL
RetrocopyEVIDAMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDIEVTLPGECKDQTFKVSVQWMSVISFQL
ParentalLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWN
LLEALAGHLNE.P.DSVQALD.ITRHLPSMRYTPVG.SFFSPPEGYYHPLGGGRE.WFGFHQSV.PAMWN
RetrocopyLLEALAGHLNEIPNDSVQALDIITRHLPSMRYTPVGCSFFSPPEGYYHPLGGGREIWFGFHQSVKPAMWN
ParentalMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRALKVEVTHCGQMKRKYRVC
MMLNID.SATAFYRAQP.IEFMCEVLDIQNINEQT.PLTDSQRVKFTKE...LKVEVTHCGQ.KRKYRVC
RetrocopyMMLNIDISATAFYRAQPVIEFMCEVLDIQNINEQTRPLTDSQRVKFTKEVKGLKVEVTHCGQVKRKYRVC
ParentalNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRC
NVT.R.ASHQTFPL.LENGQ...CTVAQYFKQKYSLQL.YPHLPCLQVGQEQKHTYLP.EVC.IVAGQRC
RetrocopyNVTKRSASHQTFPLHLENGQTIDCTVAQYFKQKYSLQLIYPHLPCLQVGQEQKHTYLPIEVCKIVAGQRC
ParentalIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQY
IKKLTD.QTSTMIKATAR.APDRQEEISRLVK.NS..GGPDPYLKEFGIVVH.EMTELTGRVLPAPMLQY
RetrocopyIKKLTDSQTSTMIKATARAAPDRQEEISRLVKGNSIMGGPDPYLKEFGIVVHDEMTELTGRVLPAPMLQY
ParentalGGRNKTVATPNQGVWDMRGKQFYAGIEVKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPC
GGRNK.VATPNQGVWDMRGKQFYAGIE.KVWAVACF.PQKQCRE.LLK.FTDQLR.ISKDAGMPI.G.PC
RetrocopyGGRNKAVATPNQGVWDMRGKQFYAGIEIKVWAVACFVPQKQCRENLLKNFTDQLRRISKDAGMPIYGHPC
ParentalFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTL
FCKYAQGADSV.PMF.HLK.TY.GLQLIVVILPGKTPVYAEVKRVGDTLLG.ATQCVQVKNVVKTSPQTL
RetrocopyFCKYAQGADSVQPMFQHLKTTYAGLQLIVVILPGKTPVYAEVKRVGDTLLGIATQCVQVKNVVKTSPQTL
ParentalSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVR
SNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD.HPSRYCATVR
RetrocopySNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVR
ParentalVQTSRQEVIQDL
.QT..QE....L
RetrocopyLQTYHQEIPEEL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_83 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000004233 1 retrocopy
retro_ogar_83 ,


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