RetrogeneDB ID:

retro_ogar_895

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873530.1:16730352..16731236(+)
Located in intron of:ENSOGAG00000012427
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000008623
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_895
ACTTGTGCCACACAGCACATTAAGAATGAACTGGAATGTGTAACCAGTATTTCCTTGGCAAATATAATTAGACAACTAAG
TAGCCTGAGTAAATATGCTGAAGATATATTTGGAGAATTATTCAATGAAGCACATAGTTTTTCCTTCAGAGTTACTCATT
GCAAGAACATGTGGACCATTTATCTGTTAGTGTTACACAGCTTGATCCTAAGGAAGAAGAATTTTCTTTGCAAGATATAA
CGATGAGAAAAGCTTTCTGAAGTTCTACAATTCAAGATCAGCAGCTTTTTGATCGCAAGACTTTGCCTTTTCCTTTACAG
GAGACATATGATGTTTGTGAACAGCCTCCACCTCTCAATATACTCACTCCTTATAGAGATGGTGGTAAAGAAGGTTTGAA
GTTTTATACCAACCCTTCATATTTCTTTGATCTGTGGAAAGAAAAAATGTTGCAAGATACAAAGGATAAGAGGAAGGAAA
AGAGGAAGCAAAAGCAGAAAAATCTAGATCGTCCTCATGAACCAGAAAAAGTGCCAAGAGCACCTCACGACAGGCGGAGA
GAATGGCAGAAGCTGGCCCAAGGTCCAGAGCTGGCTGAAGATGATGCTAATCTCTTACATAAACATATTGAAGTTGCTAA
TGGCCCAGCCTCTCATTTTGAAACAAGACCTCAGACGTACGTGGATCATATGGATGGATCTTACTCACTTTCTGCCTTGC
CATTTAGTCAGATGAGTGAGCTTCTGATTAGAGCTGAGGAAAGGGTCTTAGTCAGACCACACGAGCCACCTCCGCCTCCA
CCGATGCATGGAGCAGGAGATGCGAAACCCATACCCACGTGTATTAGTTCTGCTACAGGTTTGATAGAAAATCGCCCACA
GGCA

ORF - retro_ogar_895 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.88 %
Parental protein coverage: 63.58 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVN-SLQERVDRLSVSVTQLD
T.....IKNELECVT.ISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRV..SLQE.VD.LSVSVTQLD
RetrocopyTCATQHIKNELECVTSISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVT<SLQEHVDHLSVSVTQLD
ParentalPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIPLQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNP
PKEEE.SLQDITMRKAF.SSTIQDQQLFDRKTLP.PLQETYDVCEQPPPLNILTPYRD.GKEGLKFYTNP
RetrocopyPKEEEFSLQDITMRKAF*SSTIQDQQLFDRKTLPFPLQETYDVCEQPPPLNILTPYRDGGKEGLKFYTNP
ParentalSYFFDLWKEKMLQDTEDKRKEKRKQKQKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKH
SYFFDLWKEKMLQDT...........QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKH
RetrocopySYFFDLWKEKMLQDTXXXXXXXXXXXQKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKH
ParentalIEVANGPASHFETRPQTYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIP
IEVANGPASHFETRPQTYVDHMDGSYSLSALPFSQMSELL.RAEERVLVRPHEPPPPPPMHGAGDAKPIP
RetrocopyIEVANGPASHFETRPQTYVDHMDGSYSLSALPFSQMSELLIRAEERVLVRPHEPPPPPPMHGAGDAKPIP
ParentalTCISSATGLIENRPQS
TCISSATGLIENRPQ.
RetrocopyTCISSATGLIENRPQA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_895 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG000000222221 retrocopy
Otolemur garnettii ENSOGAG00000008623 1 retrocopy
retro_ogar_895 ,
Ictidomys tridecemlineatus ENSSTOG000000059491 retrocopy



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