RetrogeneDB ID: retro_ogar_898

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873530.1:18705908..18706847(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKRD1
• Ensembl ID: ENSOGAG00000013966
• Aliases: None
• Description: ankyrin repeat domain 1 (cardiac muscle) [Source:HGNC Symbol;Acc:15819]

Sequence

>retro_ogar_898
ATGATGCTGCTGAACGTGGAAGAGTCGGTCACAGGGAAGAAGAACAGCAATGGAGAGGCAGGGGAATTCCTTCCTGAGGC
TTTCAGAGAGGGAGAGTATGAAGCTGCAGTTACTTTAGAGAAGCAAGAGGGTCTGAAGACACTTCTGGACCACCCTGTGA
CCCTGGGGGAGCAGCGGTGGGAAAGGGAAAAACAACAAGAGGCAGAGCTCAAAAAGAAAAAACTAGAACAAAGATCAAAG
CTTGACAATTTAGAAGACTGTGAAATAATCATTCAGCTGAAGAAAAGGAAAAAATACACGAAAAGGAAAGTTCCAGTTAT
GAAGGAACCAGAACCTGTGGATGTGCCTAGGTTTCTGAAGGCTGCTCTGGAGAATCAACTGCCAGTAGTAGAAAAATTCT
TGTCAGACAAGAACAATCCAGATGTTTGTGCTGAGTATAAGCAGACAGCTCTTCACAGAGCGTGCTTGGAAGGATATTTG
GCAATGGTGGAGAAGTTAATAGAAGCTGGAGCCCAGACTGAATTCCATGACATGCTTGAGTCCACAGCGATCCACTGGGC
CAGCCGAGGAGGAAACTTGGATGTTTTAAAATTCTTGCTGAACAAAGGAGCAAAAATTAGCACCCAAGATAAGTTGCTCA
GCACCACGCTGCACATGGCAGTGGGGACCAGACAGTAGGAGTGCACAGAGTACCTCATCGTCTGCCAGGCGGACCTCAAC
GCCAAGGACAGAGAAGGAGACACCCCCTTGCATGATGCTGTGAGACCGAATCATTAAAAGATGATCTGACTCCTGATTAC
GGATGGCTCCGACCTCAACATCAAGAACTGTGCTGGGAAGACCCCGATGGATCTGGTGCTACACAGGCAGCATGGAATTA
AAGCAATATTTGACAGCCTCAAAGCGAGCTCCTATAAGACCTCTCACATAACCACATTC

Alignment

ORF - retro_ogar_898 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.07 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MMMLNVEELVTGKKNSNGEAGEFLPEDFREGEYEAAVTLEKQEDLKTLPAHPVTLGEQQWEREKQREAEL
          MM.LNVEE.VTGKKNSNGEAGEFLPE.FREGEYEAAVTLEKQE.LKTL..HPVTLGEQ.WEREKQ.EAEL
Retrocopy MMLLNVEESVTGKKNSNGEAGEFLPEAFREGEYEAAVTLEKQEGLKTLLDHPVTLGEQRWEREKQQEAEL

Parental  KKKKLEQRSKLDNLEDLEIIIQLKKRKKYKKTKVPVMKETEPEVITEPVDVPRFLKAALENKLPVVEKFL
          KKKKLEQRSKLDNLED.EIIIQLKKRKKY..TK..V....EP....EPVDVPRFLKAALEN.LPVVEKFL
Retrocopy KKKKLEQRSKLDNLEDCEIIIQLKKRKKY--TKRKVPVMKEP----EPVDVPRFLKAALENQLPVVEKFL

Parental  SDKNNPDVCDEYKRTALHRACLEGHLAIVEKLIEAGAQIEFRDMLESTAIHWASRGGNLDVLKLLLNKGA
          SDKNNPDVC.EYK.TALHRACLEG.LA.VEKLIEAGAQ.EF.DMLESTAIHWASRGGNLDVLK.LLNKGA
Retrocopy SDKNNPDVCAEYKQTALHRACLEGYLAMVEKLIEAGAQTEFHDMLESTAIHWASRGGNLDVLKFLLNKGA

Parental  KISARDKLLSTALHVAVRTGHYECAEHLIACEADLSAKDREGDTPLHDAVRLNRYKMIRLLIMYGSDLNI
          KIS..DKLLST.LH.AV.T...EC.E.LI.C.ADL.AKDREGDTPLHDAVR.N..KMI.LLI..GSDLNI
Retrocopy KISTQDKLLSTTLHMAVGTRQ*ECTEYLIVCQADLNAKDREGDTPLHDAVRPNH*KMI*LLITDGSDLNI

Parental  KNCAGKTPMDLVLHWQNGTKAIFDSLKESSYKTSRIATF
          KNCAGKTPMDLVLH.Q.G.KAIFDSLK.SSYKTS.I.TF
Retrocopy KNCAGKTPMDLVLHRQHGIKAIFDSLKASSYKTSHITTF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_898 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000006419	1 retrocopy	retro_ogar_213,
Otolemur garnettii	ENSOGAG00000013966	1 retrocopy	retro_ogar_898 ,
Tarsius syrichta	ENSTSYG00000000542	1 retrocopy	retro_tsyr_1119,