RetrogeneDB ID: retro_ogar_90

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873526.1:20492988..20494266(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026542
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000008331
• Aliases: None
• Description: None

Sequence

>retro_ogar_90
ATGAACTACGCGCGGTTTCTCACGGCGGTCAGCGCGTCCAGGACGTCGTCTCCCATCCGGGCCGTGACTGGTAAATTGAT
CAAGGCACCCAAGTCGGTCATTTCCTTGGCTACTGGAGCGCCAAATCCGAGCTTGTTCCCCTTTAAGGCCGCCGCTATCA
CCGTGGAAGATGGAACGACCATCCAGTTTGGAGAAGAGATGATGGAGAAAGCGCTGCAGTATTCTCAGAGTGCTGGGATT
CCGGAGCTGTTGTCCTGGCTGAAACAGTTCCAAGTAAGATTGCATAATCCTCCCACCGTCCATTATCCACCCAGTCAGGG
ACAAATGGACATATGTGTCACGAGTGGCAGCCAGGATGGTCTTTGTAAGGTGTTTGAGATGATCCTTAACCCCGGAGATA
ATGTTCTCCTAAATGAACCTATCTATGGAGGAACACTTCAAGCTCTGAAGCCACTGGGCTGCAACATGATCAGCGTGGCC
AGTGACCAGCACGGGATGATCCCGGGCTCCCTCAGAGAAATACTTTCCAAGTGGAAACCGGAAGATTCGAAGAACCCCGA
GAAAAACACCCCCAAGTTTCTCTACACTGTCCCAAATGGCGACAACCCTACTGGAAACTCATTAACTAGTGACCGCAAAA
AGCAAATCTACGAGCTTGCAAGAAAATATGATTTCCTCATAGTAGAAGATGATCCTTACTACTTTCTCCAATTTAATGAG
ACCTGGGCACCGACCTTTCTGTCCATGGATGTGGATGGGCGTGTCATCAGAGCGGACTCTTTTTCCAAAGTCCTCTCCTC
TGGGTTGAGAGTAGGCTTTTTAACCGGCCCGAAACCCTTGATAGAGAGAGTTGTTTTTCACACGGAAGCGTCATCTGTAC
ACGCCAGCACTTTTAACCAGTTTATGGTATCCCAGCTCCTACACCGGTGGGGAGAAGAGGGCTTCCTGGCTCACGTGCGC
CGGGTTATTGATTTCTACAGGAACCAGAAAGACGCCGTGTTGGCAGCTGCGGACAAGTGGTTAAATGGTTTGGCGGAGTG
GCATGCGCCTACCGCTGGGATGTTTTTGTGGATTAAAATTAAAGGCATTTCTGATGTAAAAGAACTGCTTGAAGAAGAAG
CCTTGAAGAGAGAGATACTACTGCTTCCTGGAAACTGTTTCTACTTCGACAGCTCTGCTCCTTGCCCCTACTTGAGAGTG
TCCTTCTCGCTGCCCTCTCCGGAACAGATGGACACGGCCTTCAAGATATTAGCCCAACTTATAAGAGAATCTTTATGA

Alignment

ORF - retro_ogar_90 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.9 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNYRRFLTATSLARTCSPIRALADKLVKAPKSVISLAAGSPNPRMFPFKTAIITMEDGTTIQFGEEIMKR
          MNY.RFLTA.S..RT.SPIRA...KL.KAPKSVISLA.G.PNP..FPFK.A.IT.EDGTTIQFGEE.M..
Retrocopy MNYARFLTAVSASRTSSPIRAVTGKLIKAPKSVISLATGAPNPSLFPFKAAAITVEDGTTIQFGEEMMEK

Parental  ALQYSQTAGIPELLSWLKQLQVKLHNPPTVHYPPSQGQMDICVTIGSQDGLCKVFEMIVNPGDNILLNEP
          ALQYSQ.AGIPELLSWLKQ.QV.LHNPPTVHYPPSQGQMDICVT.GSQDGLCKVFEMI.NPGDN.LLNEP
Retrocopy ALQYSQSAGIPELLSWLKQFQVRLHNPPTVHYPPSQGQMDICVTSGSQDGLCKVFEMILNPGDNVLLNEP

Parental  TYGGTLQVLKPLGCNIISVASDEHGMVPDSLREILSKWKPEDSKNPKKNTPKFLYTIPNGNNPTGNSLTS
          .YGGTLQ.LKPLGCN.ISVASD.HGM.P.SLREILSKWKPEDSKNP.KNTPKFLYT.PNG.NPTGNSLTS
Retrocopy IYGGTLQALKPLGCNMISVASDQHGMIPGSLREILSKWKPEDSKNPEKNTPKFLYTVPNGDNPTGNSLTS

Parental  DRKKEIYELARIYDFLIIEDDPYYFLQFNKFKSWAPTFLSMDVDGRVIRADSFSKVLSSGLRVGFLTGPR
          DRKK.IYELAR.YDFLI.EDDPYYFLQFN....WAPTFLSMDVDGRVIRADSFSKVLSSGLRVGFLTGP.
Retrocopy DRKKQIYELARKYDFLIVEDDPYYFLQFN--ETWAPTFLSMDVDGRVIRADSFSKVLSSGLRVGFLTGPK

Parental  PLIQRVVLHTEVSALHPSTFNQLMVSQLLHQWGQEGFLVHVHRVIDFYRSQRDAALAAADRWLSGLAEWH
          PLI.RVV.HTE.S..H.STFNQ.MVSQLLH.WG.EGFL.HV.RVIDFYR.Q.DA.LAAAD.WL.GLAEWH
Retrocopy PLIERVVFHTEASSVHASTFNQFMVSQLLHRWGEEGFLAHVRRVIDFYRNQKDAVLAAADKWLNGLAEWH

Parental  IPTAGMFLWIKIKGISDVRELIEEKAIKKEILLLPGNGFYNNSSAPSPYVRVSFSSASPEQMDVAFKILA
          .PTAGMFLWIKIKGISDV.EL.EE.A.K.EILLLPGN.FY..SSAP.PY.RVSFS..SPEQMD.AFKILA
Retrocopy APTAGMFLWIKIKGISDVKELLEEEALKREILLLPGNCFYFDSSAPCPYLRVSFSLPSPEQMDTAFKILA

Parental  QLIKESL
          QLI.ESL
Retrocopy QLIRESL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_90 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000008331	2 retrocopies	retro_ogar_1395, retro_ogar_90 ,
Tupaia belangeri	ENSTBEG00000015548	1 retrocopy	retro_tbel_4254,