RetrogeneDB ID: | retro_ogar_920 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873530.1:10320944..10321296(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSOGAG00000027529 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PLEKHB1 | ||
| Ensembl ID: | ENSOGAG00000007287 | ||
| Aliases: | None | ||
| Description: | pleckstrin homology domain containing, family B (evectins) member 1 [Source:HGNC Symbol;Acc:19079] |
Retrocopy-Parental alignment summary:
>retro_ogar_920
GGCTGGATGGGATACTGGGCTACTGAGACAGCACAGGACGAGGAGGACCATGTGCTCATCCACTTCAACATACACGACAG
AAAGATTGGCCAAGAGTGCCATGATGTGCAGCCCCCCAGAGGGTGGGAGCCGAGATGACCTACTGACAGTGAACCTACGG
GAAGGTTCCCGCCTGCACCTATGCGCAGACAACTGGGATAATGCCATAGCATGGAAGACAGCGCTGCTGGAGGCGAACTC
CACCCCAGTGTGTGTCTGCAGTCCAGATCAGGATTACTACGAGGTGGTGCCCCCCAGTGCACAAGAGGCCACATACATCC
ACAGCTACTAAGGACTGCCCTGTGCAGGCCCG
ORF - retro_ogar_920 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.12 % |
| Parental protein coverage: | 61.9 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | GTLGYYHDETAQDEEDRVLIHFNVRDIKIGQECQDVQPP-EGRSRDGLLTVNLREGSRLHLCAETRDDAI |
| G..GY...ETAQDEED.VLIHFN..D.KIGQEC.DVQPP.EG.SRD.LLTVNLREGSRLHLCA...D.AI | |
| Retrocopy | GWMGYWATETAQDEEDHVLIHFNIHDRKIGQECHDVQPP>EGGSRDDLLTVNLREGSRLHLCADNWDNAI |
| Parental | AWKTALLEANSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGP |
| AWKTALLEANSTPV.V.SP.QDYYEVVPP.A.EATY..SY.G.P.AGP | |
| Retrocopy | AWKTALLEANSTPVCVCSPDQDYYEVVPPSAQEATYIHSY*GLPCAGP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_920 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000007287 | 1 retrocopy |
retro_ogar_920 ,
|
| Otolemur garnettii | ENSOGAG00000028408 | 2 retrocopies |