RetrogeneDB ID: retro_ogar_920

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873530.1:10320944..10321296(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000027529
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PLEKHB1
• Ensembl ID: ENSOGAG00000007287
• Aliases: None
• Description: pleckstrin homology domain containing, family B (evectins) member 1 [Source:HGNC Symbol;Acc:19079]

Sequence

>retro_ogar_920
GGCTGGATGGGATACTGGGCTACTGAGACAGCACAGGACGAGGAGGACCATGTGCTCATCCACTTCAACATACACGACAG
AAAGATTGGCCAAGAGTGCCATGATGTGCAGCCCCCCAGAGGGTGGGAGCCGAGATGACCTACTGACAGTGAACCTACGG
GAAGGTTCCCGCCTGCACCTATGCGCAGACAACTGGGATAATGCCATAGCATGGAAGACAGCGCTGCTGGAGGCGAACTC
CACCCCAGTGTGTGTCTGCAGTCCAGATCAGGATTACTACGAGGTGGTGCCCCCCAGTGCACAAGAGGCCACATACATCC
ACAGCTACTAAGGACTGCCCTGTGCAGGCCCG

Alignment

ORF - retro_ogar_920 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.12 %
• Parental protein coverage: 61.9 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GTLGYYHDETAQDEEDRVLIHFNVRDIKIGQECQDVQPP-EGRSRDGLLTVNLREGSRLHLCAETRDDAI
          G..GY...ETAQDEED.VLIHFN..D.KIGQEC.DVQPP.EG.SRD.LLTVNLREGSRLHLCA...D.AI
Retrocopy GWMGYWATETAQDEEDHVLIHFNIHDRKIGQECHDVQPP>EGGSRDDLLTVNLREGSRLHLCADNWDNAI

Parental  AWKTALLEANSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGP
          AWKTALLEANSTPV.V.SP.QDYYEVVPP.A.EATY..SY.G.P.AGP
Retrocopy AWKTALLEANSTPVCVCSPDQDYYEVVPPSAQEATYIHSY*GLPCAGP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_920 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000007287	1 retrocopy	retro_ogar_920 ,
Otolemur garnettii	ENSOGAG00000028408	2 retrocopies	retro_ogar_2771, retro_ogar_703,