>retro_ogar_991
ATGGCAAAAGTCATGACACTTGTGATCCAGGACAATCCCTCAGGCTGGGGTCCCTGTGCCGTTCCTGAGCAGTTTCGGGA
TATGCCCTACCAGCCATTCAGCAAAGGAGATCCGTTAGGAAAGTTGGAGACTGGACAGGAACCATATCCCAAGATAAAAG
GTACACAAATAAGTACTCCTCTCAATTTGGTGGTGGAAGTCAATATGCTTATTTCCATGAGGAGGATGAAACTAGCTTTC
AACTGGTGGATTCTGCACAAACACAGAAGACTGCCTACCAGCATAATCGGATGAGATTTGCACAGCGGACCCTTCACAGA
GACATAGATCAGCGGAACATGTTGCAGTTCAACTTGCAAGCCCTGCCTAAGAGCACTAAGCAGAAGAAGAGAGAACACAT
ATGACTACAGAAAAAATTCCAGAAGCAATTCAGGGTTAGGCAAAAATGGGATCAAAAATCACAGAAACCTCAAGACTCTT
CAGTTGAAGTTCATAGTGACTGGGAAGTGAAAGAAGAAATGGATTTTCCTCAGTTGATGAAGATGTGTTATCTGTAAGTG
TCAGAGTCACAGGACATCGAGTGTTGTGGAGCCCTAGAATACTACAATAAAGCTTTTGACCTCATCACCAGGAGGAGCTG
GAAGCCGCTGTGGAGCATCAAATGCATCTTCCACACTGGCACCACTACACATGACCCTGTCATCCGGAAGCTGGCAAAAA
CTCAAGGGAATGTGTTTGCCCCCAATGCCATCCTGGCCACTCTAATCAGCTGTACCCGCTCAGTGTACTCCTGGGATATT
GTCATCCAGAGAGTTGGGTCCAAGCTCTTATTTGATAAGAGGGCAACTCAGACTTTGACCTCCTTAATAGTGAGTGAGAC
AGCCAATGAGCCCCCTCAAGATGCAGGTAATTCCTTCAATTCACCCCACAATCTGGCCATGGAAGCAACCTACATTGACC
ACAGTTTCTCCCAGCAGTGCCTGAGAATGGGAAGAAAAGATACAATTTTCCCAGCCCAAACCCATTTGTGGAAGATGACA
TGGATAAGAATGAGATTGCATCTGTTGCATACCGGTATTGCGGGTGGAAGCTTGGGGATGATATTGACCTTATTGTTCGT
TGTAAGCATGATGGTGTCATGACTAGAGCCAATGGGGAGGTGTCCTTCATCAACATCAAGACACTTAATGAGTGAGATTC
CAGGCACTGAAACAGTGTTGACTGGCATCAGAAGCTGGACTCTCAGCGAGGAGCCATCATTGCCACTGAACTAAAGAACA
GCTATAAGCTGTCTAGATGACCTGCTGTGCTTTGCAGGCTGGATCTAAGTACCTCAAGCTCGGTTATGTGTCTCAATACC
ACGTGAAAGAC
ORF - retro_ogar_991 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.21 % |
Parental protein coverage: |
83.76 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGK-VADWTGATYQDKRYTNKYSSQFGGGSQY |
| MAK.MT.VIQDNPSGWGPCAVPEQFRDMPYQPFSKGD.LGK.V.DWTG...QDKRYTNKYSSQFGGGSQY |
Retrocopy | MAKVMTLVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDPLGK<VGDWTGTISQDKRYTNKYSSQFGGGSQY |
|
Parental | AYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRTLRRDKDRRNMLQFNLQALPKSAKQKERERIRLQKK |
| AYFHEEDETSFQLVD.A.TQKTAYQ.NRMRFAQRTL.RD.D.RNMLQFNLQALPKS.KQK.RE.I.LQKK |
Retrocopy | AYFHEEDETSFQLVDSAQTQKTAYQHNRMRFAQRTLHRDIDQRNMLQFNLQALPKSTKQKKREHI*LQKK |
|
Parental | FQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRI |
| FQKQF.VRQKWDQKSQKP.DSSVEV.SDWEVKEEMDFPQLMKM.YL.VSE.QDIECCGALEYY.KAFD.I |
Retrocopy | FQKQFRVRQKWDQKSQKPQDSSVEVHSDWEVKEEMDFPQLMKMCYL*VSESQDIECCGALEYYNKAFDLI |
|
Parental | TTRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD |
| T.RS.KPL.SIK.IFHT.TTT.DPVIRKLAKTQGNVFA..AILATL.SCTRSVYSWDIV.QRVGSKL.FD |
Retrocopy | TRRSWKPLWSIKCIFHTGTTTHDPVIRKLAKTQGNVFAPNAILATLISCTRSVYSWDIVIQRVGSKLLFD |
|
Parental | KR-DNSDFDLLT-VSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRM-GKERYNFPNPNPFVED |
| KR..NSDFDLL..VSETANEPPQD.GNSFNSP.NLAMEATYI.H.FSQQCLRM.GK.RYNFP.PNPFVED |
Retrocopy | KR<GNSDFDLLN>VSETANEPPQDAGNSFNSPHNLAMEATYIDHSFSQQCLRM<GKKRYNFPSPNPFVED |
|
Parental | DMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQ |
| DMDKNEIASVAYRY..WKLGDDIDLIVRC.HDGVMT.ANGEVSFINIKTLNE.DSRH.N.VDW.QKLDSQ |
Retrocopy | DMDKNEIASVAYRYCGWKLGDDIDLIVRCKHDGVMTRANGEVSFINIKTLNE*DSRH*NSVDWHQKLDSQ |
|
Parental | RGAVIATELKNNSYKLAR-WTCCALLAGSEYLKLGYVSRYHVKD |
| RGA.IATELK.NSYKL.R..TCCAL.AGS.YLKLGYVS.YHVKD |
Retrocopy | RGAIIATELK-NSYKLSR<MTCCALQAGSKYLKLGYVSQYHVKD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_991 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
4 retrocopies.