RetrogeneDB ID: retro_oluc_3

Retrocopy location

• Organism: Ostreococcus lucimarinus
• Coordinates: 9:483944..485447(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: OSTLU_46561
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: OSTLU_33739
• Aliases: None
• Description: None

Sequence

>retro_oluc_3
ATGGACATGCGTTTTATGTTCGCTACTGCTTATGCTTTCGATAGTCCTATCCGCAACTGGGACATCAGCCAAGTGACGAA
CACGAGTTACATGTTCTATTCTATTGCTGCATCTTTCAATGTTTTCAACCAATCCGTCGAGAACTGGAACACGAGCCAAG
TTATGGACATGCGTGGGATGTTCGGGAACGCACGTTACTTCAACAAGCCTATCGGCGGCTGGAACACGAGCCAGGTTACG
GACATGCGTAACATGTTCGTTACCGCCTCTTCCTTCAACCAGCCCATCGGTGACTGGGACACGAGCCAGGTTACGGACAT
GCGTTACATGTTCGCTACCGCCTCTTCCTTCAACCAGCCCATCGGTGACTGGGACACGAGCCAGGTTACAGACATGCGTG
GAATGTTGGGGTCTGTGTCCTTCAATCAGCCCATCGGGAACTGGAACACGAGCCAGGTTACAGACATGCGTACGATGTTC
GCTACCGCCTCTTCCTTCAACGCGCCTATCGGTGACTGGAACACGAGCCAAGTTACAGACATGGGTAGAATGTTTTACGC
AGCCTCTTCTTTTAACCGGTCTATTGGCGACTGGAACACGAGCCAAGTCACGGACATGCAGTCGATGTTTTACGCCTCTT
CATTCGATCAACCCATCGGGAACTGGGACACAAGCCTAGTCACATACATGAATTCGATGTTCAACAGCGCAGTTTCCTTC
AACCAGTCTATCGGTGGCTGGAACACGAGCCGAGTGGTGAGCATGCAGTCGATGTTCGCGAACGCATTTTCCTTCAACCA
GCCCATCGGGAACTGGAACACGGGCCGAGTGGTGAGCATGCATTCCATGTTTGACAGCGCAGTTTATTTCAACCAGCCCA
TCGGGAACTGGAACACGGGCCGAGTGGTGAGCATGAATTCCATGTTTGACAGCGCAGGCTTTTTCAACCAGCCCATCGGG
AACTGGGACACGAGCCAGGTTACAGACATGAATTCCATGTTTGATAGCGCAGGCTCTTTCAACCAGCCCATCGGGAACTG
GAACACGAGCCAGGTTACAGACATGAATTCCATGTTTGATAGCGCAGGCTCTTTCAACCAGCCCATCGGTGACTGGGACA
CGAGCCAGGTTACAGACATGCATTGGATGTTCCAGGGTGCCTCTTCCTTCAACCAGCCTATTGGAGACTGGGATACGAGC
CAAGTGGTGACCTCGTACTCATTTAGCGAAATGTTCAAGGACGCAACGGCGTGGCTATGCTCACACACACACAATACGTC
GGATCCGATGCATTTTCAAAGATACTACGATGGTCCACCGTCTTTTTGGTTCGAGTCAGCGGCTGGAATCGGTGCAGTGT
GCTTGTCTCCACCACCGCCAACCACACTACCGTGTGTATATGTCGCCGCCCCTCCGTTGACCGCAAGGTCGACTGGAACC
GCGAGGTCGAGTGTCGCACTCTCGCTATATACGACAGTCATTATCATATACTTCCACGCCTGA

Alignment

ORF - retro_oluc_3 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.23 %
• Parental protein coverage: 97.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DWDTGNVTNMGSAFSSKYYFNASIGNWNTSRVTYMGSMFQSAYSFNQDIGNWNTSQVTNMYSMFQSANSF
          DWDT..VT.M...F.....FN..IG.W.TS.VT.M..M..S..SFNQ.IGNWNTSQVT.M..MF..A.SF
Retrocopy DWDTSQVTDMRYMFATASSFNQPIGDWDTSQVTDMRGMLGSV-SFNQPIGNWNTSQVTDMRTMFATASSF

Parental  NQDIGNWNTARVTYMGSMFQYASSFDQDIGGWNTSQVTNMYSMFQYASSFDQDIGNWNTSRVTYMYSMFQ
          N..IG.WNT..VT.MG.MF..ASSF...IG.WNTSQVT.M.SMF.YASSFDQ.IGNW.TS.VTYM.SMF.
Retrocopy NAPIGDWNTSQVTDMGRMFYAASSFNRSIGDWNTSQVTDMQSMF-YASSFDQPIGNWDTSLVTYMNSMFN

Parental  GASAFDQDIGGWNTSRVTNMGSMFQYASSFDQDITNWNTSRVTNMYSMFQYASSFDQDIGNWNTSRVTYM
          .A..F.Q.IGGWNTSRV..M.SMF..A.SF.Q.I.NWNT.RV..M.SMF..A..F.Q.IGNWNT.RV..M
Retrocopy SAVSFNQSIGGWNTSRVVSMQSMFANAFSFNQPIGNWNTGRVVSMHSMFDSAVYFNQPIGNWNTGRVVSM

Parental  YSMFQGASAFDQDIGGWNTSRVTNMGSMFQYASSFDQDITNWNTSRVTNMGSIYMFYNAGAFNQPIGSWN
          .SMF..A..F.Q.IG.W.TS.VT.M.SMF..A.SF.Q.I.NWNTS.VT.M.S..MF..AG.FNQPIG.W.
Retrocopy NSMFDSAGFFNQPIGNWDTSQVTDMNSMFDSAGSFNQPIGNWNTSQVTDMNS--MFDSAGSFNQPIGDWD

Parental  TANVTTMRSMFQGASAFNQDIGNWNTTSVTDMYS---MFGSATAF
          T..VT.M..MFQGAS.FNQ.IG.W.T..V...YS...MF..ATA.
Retrocopy TSQVTDMHWMFQGASSFNQPIGDWDTSQVVTSYSFSEMFKDATAW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ostreococcus lucimarinus was not studied using RNA-Seq expression data.

ChIP-Seq

Ostreococcus lucimarinus was not studied using ChIP-Seq data.

EST

Ostreococcus lucimarinus was not studied using EST data.

TSS

Ostreococcus lucimarinus was not studied using FANTOM5 data.

Lab

retro_oluc_3 was not experimentally validated.

Homology

Retrocopy orthology:

Ostreococcus lucimarinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Ostreococcus lucimarinus	OSTLU_33739	1 retrocopy	retro_oluc_3 ,