RetrogeneDB ID: retro_oluc_7

Retrocopy location

• Organism: Ostreococcus lucimarinus
• Coordinates: 12:191624..192665(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: OSTLU_39468
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: OSTLU_32923
• Aliases: None
• Description: None

Sequence

>retro_oluc_7
ATGTCGCCGTGGGCGGCGAGGGCGGATCAGGAGGCGGCGAGGGCGCGGGCGACGGCGTCGCGGGAGCGAGACGCGGCGGA
GCCGCTGTTGCGAGACAATCCCGATCGGTTTTGTTTGTTTCCGATCAAGCACGCGAAGGTTTGGGAGATGTATAAGAAGG
CGGAGGCGAGTTTTTGGACGGCGGAGGAGGTCGACTTGACGTACGATTACAGAGATTGGATCACATTGAACGATAACGAG
CAACACTTTATATCGCACGTGTTGGCGTTTTTCGCCGCGAGCGACGGCATCGTGTTGGAGAATTTATGCTCTCGGTTCAT
GACGGATGTGCAGCTCCCGGAGGCTCGATCGTTTTATGGCTTTCAGCTCGCGATCGAAAACATTCACAGCGAGATGTATT
CGTTGCTCTTGGACACGTACATTAAGGATCCAAAGAAGAAATCCGACTTGTTTCGGGCGATTCACACGGTGCCCACCGTG
GCAAAGAAGGCGGATTGGGCGCTCAAATGGATCGGTAGCGACGCGAGTTTCGCCGAGCGTCTCGTCGGTTTCGCGTGCGT
GGAGGGAATTTTCTTCAGCGGATCTTTCTGCGCCATCTTCTGGTTGAAAAAGCGAGGATTGATGCGTGGTTTGACATTTT
CCAACGAGCTCATAAGCCGCGACGAAGGATTACACTGCGACTTTGCGTGTCTGTTGTATAGCATGCTGGAGAATCCATTA
TCGGAGAAGGTTCTACACCAACTCGTTGGAGATGCGGTGACAATAGAGAAAGAGTTCGTGTGCGACGCTCTGAGCTGTTC
CCTCGTCGGTATGAATGCAAACATGATGAGCACGTACATCGAGTTTGTCGCCGACCGACTTCTCCTTCAGTTGGGCGTGT
CGAAGCTTTACAACGCGGTCAATCCGTTTGATTGGATGGAGCTCATTTCGCTCCAAGGCAAGGCAAACTTTTTCGAACAT
CGCGTGGATCAGTACCAGAAAGCAGGCGTCATGCAGGGTGGAGAAGAGAATCACTCGTTCCGCACTGACTGCGATTTTTA
G

Alignment

ORF - retro_oluc_7 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.83 %
• Parental protein coverage: 98.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AEPLLDENDQRFTMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMKHWETLTKDEKHFVSHVLAFFAASD
          AEPLL..N..RF..FPI....VWEMYKKAEASFWTAEEVDL..D...W.TL...E.HF.SHVLAFFAASD
Retrocopy AEPLLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWITLNDNEQHFISHVLAFFAASD

Parental  GIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDQYIKDPVEKDHLFRAIDTIPCVKKKAD
          GIVLENL..RFM..VQ.PEAR.FYGFQ.AIENIHSEMYSLL.D.YIKDP..K..LFRAI.T.P.V.KKAD
Retrocopy GIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKDPKKKSDLFRAIHTVPTVAKKAD

Parental  WALKWIDSSDSFAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLFSM
          WALKWI.S..SFAERL..FAC.EGIFFSGSFC.I.WLKKRGLM.GLTFSNELISRDEGLH.DFACLL.SM
Retrocopy WALKWIGSDASFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSM

Parental  LNNKPSEETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFCSLGLAKEYNTTNPFDW
          L.N..SE......V..AV.IEKEFVCD.L.C.LVGMNA.MMS.YIE.VAD.L...LG..K.YN..NPFDW
Retrocopy LENPLSEKVLHQLVGDAVTIEKEFVCDALSCSLVGMNANMMSTYIEFVADRLLLQLGVSKLYNAVNPFDW

Parental  MELISLQGKTNFFEKRVGEYQKAGVMNSIGGGNANAFSLDEDF
          MELISLQGK.NFFE.RV..YQKAGVM...GG.....F..D.DF
Retrocopy MELISLQGKANFFEHRVDQYQKAGVMQ--GGEENHSFRTDCDF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ostreococcus lucimarinus was not studied using RNA-Seq expression data.

ChIP-Seq

Ostreococcus lucimarinus was not studied using ChIP-Seq data.

EST

Ostreococcus lucimarinus was not studied using EST data.

TSS

Ostreococcus lucimarinus was not studied using FANTOM5 data.

Lab

retro_oluc_7 was not experimentally validated.

Homology

Retrocopy orthology:

Ostreococcus lucimarinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Ostreococcus lucimarinus	OSTLU_32923	1 retrocopy	retro_oluc_7 ,