RetrogeneDB ID: | retro_opri_378 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_104040:6..666(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB21 | ||
Ensembl ID: | ENSOPRG00000011037 | ||
Aliases: | None | ||
Description: | RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:18263] |
Percent Identity: | 68. % |
Parental protein coverage: | 99.55 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | AAAGGA-AAAGRPYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD |
AAAG.....A...Y.F.VVLL.E.C..KTSLVL.Y.ENK...KHITT.QASF...KL.IGGKRVNLAIWD | |
Retrocopy | AAAGWQ*QVAADAYRFNVVLLEEACMAKTSLVLHY*ENKLKNKHITTMQASF-*NKLTIGGKRVNLAIWD |
Parental | TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNW-VKELRK-MLGNEICLCIVGSKIDL-KERHV |
TAGQE.....G........GAILVYDI.DEDSFQK......K..RK.MLGNEIC..IVG.KIDL.KERHV | |
Retrocopy | TAGQES-PCIGTNLLQRFKGAILVYDIKDEDSFQKXXXXGSKNYRK<MLGNEICSYIVGNKIDLEKERHV |
Parental | SILEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDE-RAKGNGSSQPGAARRGVQIIDDE |
S..EAES.A.SVG.KH.HTSAKQNK.IEE..LDLCKR.IETA.VD..RAK..GSSQPGAA.RG.QI.DDE | |
Retrocopy | STQEAESHAQSVGKKHHHTSAKQNKEIEEFCLDLCKRIIETAPVDDGRAKDSGSSQPGAAQRGMQITDDE |
Parental | PQAQ-SSGGGCCSSG |
PQAQ.S.G.GCCSSG | |
Retrocopy | PQAQ>SGG-GCCSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000004732 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009168 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013239 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007883 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000011037 | 1 retrocopy |
retro_opri_378 ,
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