RetrogeneDB ID: | retro_opri_656 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_22328:7347..8105(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBB | ||
Ensembl ID: | ENSOPRG00000014770 | ||
Aliases: | None | ||
Description: | tubulin, beta class I [Source:HGNC Symbol;Acc:20778] |
Percent Identity: | 79.84 % |
Parental protein coverage: | 57.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP-TGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLE |
.RE.VHIQA..CGN.IGAKFWEVIS.EH.IDP.TG.YHGDSDLQL..IS.YYNEATG.KY.P.AILVDLE | |
Retrocopy | IRESVHIQASECGNLIGAKFWEVISLEHNIDP>TGAYHGDSDLQLNCISLYYNEATGDKYTPCAILVDLE |
Parental | PGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR-KEAESCDCLQGFQLTHS |
PGT.DSV.SGPFGQ.FRPD..VFGQSG.GNNWAKGHYTEGAELVDSVL.V...KEAESCDCLQ.FQLTHS | |
Retrocopy | PGTVDSVCSGPFGQLFRPDSLVFGQSGTGNNWAKGHYTEGAELVDSVLGVEQ<KEAESCDCLQDFQLTHS |
Parental | LGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALY |
.GGG.G.GMGTLLISKI.EEYPD.IMNTFSVVPSPKVSDTVVEP...TLSVHQLVE.T.ET.CIDN.ALY | |
Retrocopy | FGGGMGLGMGTLLISKI*EEYPDCIMNTFSVVPSPKVSDTVVEPSSTTLSVHQLVEDTNET-CIDNKALY |
Parental | DICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG-QLNADLRKLAV |
DICF.TLKLTT.TYG.L..L.SA...G..TCL.FPG.QLNADL.KLAV | |
Retrocopy | DICFHTLKLTTSTYGSLSYLFSAHEHG-HTCLHFPG<QLNADLHKLAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000013572 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022655 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015992 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023684 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032213 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014770 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000016419 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000017939 | 3 retrocopies |