>retro_opri_82
GGAGTGAAGACTGGCCGCTGCCTGCGAGGAGGGAATTCAACCCAGGGCACCTGTGAGATCTTCACCTGGTGTCCAGTGGA
GACCAAGTCCGTGCCCAGGAAGCCATTGCTGGGGGATGCTGAAGACTTCACTGTTTATATAAAGAACTTCACCCGCTTCC
CCAAATTCAACTTCTCCAAGACGAACGTGGACACGGACAAGGCGCTGCTGAAATCCTGTCGCTTTGGCCCCAACAACCTC
TAGTGCCCCATCTTCCATGTATGCTCTGTGGCCCGCTGGGCGGGGAGCACCTGTGAGGACATAGCCCTGGAGGGCGGTGT
GATCAGCATTCACATTGATTGGAACTGTGATCTTGACCAACCAGGCTCTGAATGCAACCCTCACTACTCTTTGAGCCGTC
TGGACCACAACTTTACAAAGTCTATATCCTCAGGGTACCACTTCAGGTTTGCCAAGTACTACCGAGTTGCTGCGGGGAAG
GAGTTCCGCACCTTGATTAAAGCCTATGGCATCTGCTTTGATGTGCTGGTGAATGGGCAGGGCAGCTTTTGTCTGTGACC
TGGTGCTCATCAACATCATTAAGAAGAGAGAGTTCTACTGAGAGAAGAAGTTTGAGAAAGTGAGGGGCCAAGAGGACCGG
GCCCTGGAGGCTAAAGACCAGGTACAGGGGCAGGAGGAGTTGGAGCAGGAGTCGCTTGCCTCGGGGCTGATGGAACTACC
CAGGACACTGCGGAGCAGCAGCCAGGACGGTGGTTTTCAGGGGAACGGCAGTGTGTGCCGACAGGTGCTGGAGTCTGAC
ORF - retro_opri_82 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.77 % |
Parental protein coverage: |
72.91 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | GVKTGRCLPAGNSTQGTCEIFAWCPVETKSMPRKPLLGDAEDFTVYIKNFIRFPKFNFSKTNVDTDKTLL |
| GVKTGRCL..GNSTQGTCEIF.WCPVETKS.PRKPLLGDAEDFTVYIKNF.RFPKFNFSKTNVDTDK.LL |
Retrocopy | GVKTGRCLRGGNSTQGTCEIFTWCPVETKSVPRKPLLGDAEDFTVYIKNFTRFPKFNFSKTNVDTDKALL |
|
Parental | KSCHFGPNNLYCPIFHVGSVVRWAGSTFEDIALEGGVIGIHIEWDCDLDQPGSECNPHYSFSRLDHKFXX |
| KSC.FGPNNL.CPIFHV.SV.RWAGST.EDIALEGGVI.IHI.W.CDLDQPGSECNPHYS.SRLDH.F.. |
Retrocopy | KSCRFGPNNL*CPIFHVCSVARWAGSTCEDIALEGGVISIHIDWNCDLDQPGSECNPHYSLSRLDHNFTK |
|
Parental | XXXXXXXXXFAKYYRDAAGMEFRTLIKAYGIRFDVLVN-GRAAFVCDLVLIYIIKKREFYREKKFEKVRG |
| .........FAKYYR.AAG.EFRTLIKAYGI.FDVLVN.GRAAFVCDLVLI.IIKKREFY.EKKFEKVRG |
Retrocopy | SISSGYHFRFAKYYRVAAGKEFRTLIKAYGICFDVLVN>GRAAFVCDLVLINIIKKREFY*EKKFEKVRG |
|
Parental | RDDRTLEAEDQVQGQEE----SLASGLMELPRT-PEQQQDGGFQGNGSVCRQVLESD |
| ..DR.LEA.DQVQGQEE....SLASGLMELPRT.....QDGGFQGNGSVCRQVLESD |
Retrocopy | QEDRALEAKDQVQGQEELEQESLASGLMELPRTLRSSSQDGGFQGNGSVCRQVLESD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ochotona princeps was not studied using RNA-Seq expression data.
Ochotona princeps was not studied using ChIP-Seq data.
Ochotona princeps was not studied using EST data.
Ochotona princeps was not studied using FANTOM5 data.
retro_opri_82 was not experimentally validated.
Retrocopy orthology:
Ochotona princeps does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.