>retro_opri_960
TCATCATGCCCAGTAAATGAAACTAGCAGTGCCTTTGAAGTGGACCATGAATGCTTGGGCAAATGTCAGGGCCTGTTTGC
ACTCAGTTCTATGTGCAGTCTGACGCTCCGTTTATTCAGTGTCTGGAGTGCTGTGGGATGTTTGCACCTCAAACGTTTGT
GATGCATTCTCACAGATCACCTGACAAAAGAACTTGCCACTGGGGTTTTGAATCAGCCAAATGGCACTGTTATCTTCATG
TGAACCAAAAGTACTTGGGGACACCTGAAGAAAAGAAGCTGAAAATAATTTTAGAAGAAATGAAGGAGAAATTTAGCATG
AGAAATGGGAAGAGAACTCAACCTAAGGCAGATGCGCCATCAGGAATGGAATTACAGTCATGGTATCCTGTTATAAAGCA
GGAAGGTGACCATGTTTCTCCGACACATTCATTTCTACATCCCAGCTACTATTTACACATGTGTGATAAAGTGGTTGCCC
CCAATGTGTCGCTTACTTCTGCTGTATCCCAGTCCAAAGAGGTTACAAAGACAGAGGCAAGTAAGACTGTATCACGACTG
CCAGAGAAACAGCACGCTGGTGGGAAACCTCAAAAAATAGCGTCTTATCCGGATGTCTCACTTGAGGAACAGGAGAAGAT
GGATTTGAAAATAAACAGAGAATTATATGGTCGTTCAGATCGATCAATCTTAAATAGTTCTCCGAATAAGAAGAAATCTG
ACTCTGCCACTTGCAACTTAGTCAGAGACACAAGCAATGTGGGAGTTGACCGTGATGCTACAGCCTCATTCCTGCTTCTT
GTCAAAGATGTCACTTGTGAAGATGATAAAGGAAAAATCATGGAAGAAGTAATGAGAACTTATGTAAAACAACAGGACAA
ACTGAACTCAATTTTGCAAAAAAAAGCAACAACTTCAGATGGAAGTGGAAATGTTGAGTAGTTCAAAAGCGATGAGGGAA
CTCACTGAAGAACAGCAGAATCTGCAGAAGGTACTTGAGTCTTTACAGAGTGAACATGCTCAGAGAATGGAAGAGTTCTA
TGTTGAGCAGAAGGACTTAGAGAAAAAATTAGAGCAGGTAATGAAGCAGAAATGTACCTGTGACTCAAATTTAGAGAAAG
ACAAGAGGCCGAATATGCAGCACAGTTGGCGGAACTGAGACAGCGACTGGACCTTGCTGAGGCTGATAGGCAAGAACTCC
AAGACGAACTCAGACAGGAGCGGGAGGCAAGACAGAAGTTAGAGATGATGATCAAAGAGCTGAAGCTGCAAATTTTGAAA
TCATCGAAGGCTGCTAAAGAA
ORF - retro_opri_960 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.51 % |
Parental protein coverage: |
63.64 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | SLAQLKETGSAFEVEHECLGKCQGLFA-PQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWG |
| S.....ET.SAFEV.HECLGKCQGLFA..QFYVQ.DAP.IQCLECCGMFAPQTFVMHSHRSPDKRTCHWG |
Retrocopy | SSCPVNETSSAFEVDHECLGKCQGLFA<TQFYVQSDAPFIQCLECCGMFAPQTFVMHSHRSPDKRTCHWG |
|
Parental | FESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRNGKRTQPKADAPSGMELQSWYPVIKQEGDHV |
| FESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRNGKRTQPKADAPSGMELQSWYPVIKQEGDHV |
Retrocopy | FESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRNGKRTQPKADAPSGMELQSWYPVIKQEGDHV |
|
Parental | SPTHSFLHPSYYLYMCDKVVAPNVSLTSAVSQSKEVAKTEASKTASRLPEKQHAGGKPQKTASYPDVSLE |
| SPTHSFLHPSYYL.MCDKVVAPNVSLTSAVSQSKEV.KTEASKT.SRLPEKQHAGGKPQK.ASYPDVSLE |
Retrocopy | SPTHSFLHPSYYLHMCDKVVAPNVSLTSAVSQSKEVTKTEASKTVSRLPEKQHAGGKPQKIASYPDVSLE |
|
Parental | EQEKMDLKINRELYGRSDRSILNSSPNKKKSDPATCNLVRDTSNVGVDRDATASSLLLVKDVTCEDDKGK |
| EQEKMDLKINRELYGRSDRSILNSSPNKKKSD.ATCNLVRDTSNVGVDRDATAS.LLLVKDVTCEDDKGK |
Retrocopy | EQEKMDLKINRELYGRSDRSILNSSPNKKKSDSATCNLVRDTSNVGVDRDATASFLLLVKDVTCEDDKGK |
|
Parental | IMEEVMRTYVKQQEKLNSIL-QKKQQLQMEVEMLSSSKAMRELTEEQQNLQKELESLQSEHAQRMEEFYV |
| IMEEVMRTYVKQQ.KLNSIL....QQLQMEVEMLSSSKAMRELTEEQQNLQK.LESLQSEHAQRMEEFYV |
Retrocopy | IMEEVMRTYVKQQDKLNSIL>XXXQQLQMEVEMLSSSKAMRELTEEQQNLQKVLESLQSEHAQRMEEFYV |
|
Parental | EQKDLEKKLEQVMKQKCTCDSNLEKDK-EAEYAAQLAELRQRLDLAEADRQELQDELRQEREARQKLEMM |
| EQKDLEKKLEQVMKQKCTCDSNLEKDK.EAEYAAQLAELRQRLDLAEADRQELQDELRQEREARQKLEMM |
Retrocopy | EQKDLEKKLEQVMKQKCTCDSNLEKDK<EAEYAAQLAELRQRLDLAEADRQELQDELRQEREARQKLEMM |
|
Parental | IKELKLQILKSSKAAKE |
| IKELKLQILKSSKAAKE |
Retrocopy | IKELKLQILKSSKAAKE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ochotona princeps was not studied using RNA-Seq expression data.
Ochotona princeps was not studied using ChIP-Seq data.
Ochotona princeps was not studied using EST data.
Ochotona princeps was not studied using FANTOM5 data.
retro_opri_960 was not experimentally validated.
Retrocopy orthology:
Ochotona princeps does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.