>retro_pabe_1434
AGAAAGACACGGCAAAATTCTTCAAGGTTTAGTGCAAGCAATAATAGAGAACTTCAAAAACTACCATCCTTAAAAGATGT
TCCTCCTGCTGATCAAGAGAAGCTTTTTATCCAGAAGTTATGTCAGTGTTGTGTCTTTTTTGACTTTGTTTCTGATCCAC
TAAGTGACCTAAAGTGGAAGGAAATAAAATGAGCTGCTTTAAGTGAAATGGTAGAACATATCACCCATAATTGGAACGTG
ATCACAGAGCTATTTACCCAGAAGTAGTCCATATGTTTGCAGTTAAGATGTTTTGAACATTACCACCTTCCTCCAATCCT
AGGGGAGCAGAATTTGACCCAGAGGAAGATGAACCAACGTTAGAAACAGCATGGCTTCATCTACAATTGTTTATGAATTT
TTCTTAAGATTTTTAGAGTCTCCGGATTTCCAACCTAATATAGCGAAGAAATATATTGATCAGAAGTTTGTATTGCAGCT
TTTAAAGCTCTTTGACAGTGAAGATCCTCGGGAGAGAGATTTTCTTAAAACCACCCTTCACAGAATCTATGGGAAATTCC
TAGGCTTGAGAGCTTACATCAGAAAACAGATAATATATTTTATAGGTTTATTTATGAAACAGATCATCATAACAGCATAG
GAGAGTTACTGGAAATATTGGGAAGTATAATTAATGGATTTGCCTTACCACTAAAAGAAGAACACAAGATTTTCTTATTG
AAGGTGTTACTACCTTTGAACAAAGTGAAATCTCTGAGTGTCTACCACCACCAGCTGGCATACTGTGGAGTGCAGTTTTT
AGAAAAGGATAGCACCCCTACAGAACCAGTGGTGATGGCACTTCTCAAATACTGGCCAAAGACTCACAGTCCAAAAGAAG
TAATGTTCTTAAATGAATTAGAAGCGATTTTAGATGTCATAGAACCATCAGAATTTGTGAAGACCATGGAGCCCCTCTTC
CAGCAGTTGGCCAAATGTGTCTCCAGCCCACAGTTCCAGGTGGCAGAGCGAGCTCTCTATTACTGGAATAATGAATACAT
CATGAGTTTAATCAGTGACAACGCAGCAAAGATTCTGCCCATCATGTTTCCTTCCTTGTACCACAACTCAAAGACCCATT
GGAACAAGATAATACATGGTTTGATATACAATGCCCTGAAGCTGTTCATGGAAATGAACCAAAAGCTATCTGATGACTGT
ACACAACAATTTAAGGCAGAGAAACTAAAAGAGAAGCTAAAAATGAAAGTACGGGAAGAAGCATGGGTTAAAATAGAAAA
TCTAGCCAAAGCCAATCCCCAG
ORF - retro_pabe_1434 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.59 % |
Parental protein coverage: |
65.27 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | KERRQSSSRFNLSKNRELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKFKEVKRAGLNEM |
| ...RQ.SSRF..S.NRELQKLP.LKD.P....E.LFIQKL.QCCV.FDFVSDPLSDLK.KE.K.A.L.EM |
Retrocopy | RKTRQNSSRFSASNNRELQKLPSLKDVPPADQEKLFIQKLCQCCVFFDFVSDPLSDLKWKEIK*AALSEM |
|
Parental | VEYITHSRDVVTE-AIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQL-VYEFFLRF |
| VE.ITH...V.TE.AIYPE.V.MF.V..F.TLPPSSNP.GAEFDPEEDEPTLE.AW.HLQL.VYEFFLRF |
Retrocopy | VEHITHNWNVITE<AIYPEVVHMFAVKMF*TLPPSSNPRGAEFDPEEDEPTLETAWLHLQL<VYEFFLRF |
|
Parental | LESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRRQINHIFYRFIYE |
| LESPDFQPNIAKKYIDQKFVL.LL.LFDSEDPRERDFLKT.LHRIYGKFLGLRAYIR.QI......F... |
Retrocopy | LESPDFQPNIAKKYIDQKFVLQLLKLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQIIYFIGLFMKQ |
|
Parental | -TEHHNGIAELLEILGSIINGFALPLKEEHKMFLIRVLLPLHKVKSLSVYHPQLAYCVVQFLEKESSLTE |
| ...H...I.ELLEILGSIINGFALPLKEEHK.FL..VLLPL.KVKSLSVYH.QLAYC.VQFLEK.S..TE |
Retrocopy | <DHHNS-IGELLEILGSIINGFALPLKEEHKIFLLKVLLPLNKVKSLSVYHHQLAYCGVQFLEKDSTPTE |
|
Parental | PVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEPLFRQLAKCVSSPHFQVAERALYYWNNE |
| PV...LLK.WPKTHSPKEVMFLNELE.ILDVIEPSEF.K.MEPLF.QLAKCVSSP.FQVAERALYYWNNE |
Retrocopy | PVVMALLKYWPKTHSPKEVMFLNELEAILDVIEPSEFVKTMEPLFQQLAKCVSSPQFQVAERALYYWNNE |
|
Parental | YIMSLISDNAARVLPIMFPALYRNSKSHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQYKAEKQKGRFRM |
| YIMSLISDNAA..LPIMFP.LY.NSK.HWNK.IHGLIYNALKLFMEMNQKL.DDCTQQ.KAEK.K....M |
Retrocopy | YIMSLISDNAAKILPIMFPSLYHNSKTHWNKIIHGLIYNALKLFMEMNQKLSDDCTQQFKAEKLKEKLKM |
|
Parental | KEREEMWQKIEELARLNPQ |
| K.REE.W.KIE.LA..NPQ |
Retrocopy | KVREEAWVKIENLAKANPQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .11 RPM |
27 .20 RPM |
SRP007412_cerebellum |
0 .24 RPM |
13 .62 RPM |
SRP007412_heart |
0 .09 RPM |
2 .74 RPM |
SRP007412_kidney |
0 .10 RPM |
5 .47 RPM |
SRP007412_liver |
0 .09 RPM |
2 .69 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_1434 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_1434 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_1434 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
6 retrocopies.