RetrogeneDB ID: | retro_pabe_2312 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:73562181..73563048(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC137 | ||
Ensembl ID: | ENSPPYG00000008741 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 137 [Source:HGNC Symbol;Acc:33451] |
Percent Identity: | 76.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MARAGRGAAVSRVQAGPGSPRQAR-GRQQVQPLGKQGAAPWPGLRSKEKKKVNCKPKNQDEQEIPFRLRE |
MA.AG.GAAV.RV.AGPGSP.......QQVQPLG.Q..APW..L.SKE.K..NCKPK.QDEQEIPFRL.E | |
Retrocopy | MAQAGHGAAVPRVPAGPGSPQREQ>SGQQVQPLGNQRPAPWSRLHSKEEKG-NCKPKTQDEQEIPFRLWE |
Parental | IMRSRQEMKNPISNKKRKKAAQVTFRKTLEKEAKGAEPDITIPKFKQRKGESDGAYIQRMQQEAQHVLFL |
IMRSR.EMKNP..NKKRKKAAQV.FRKTLEKEAKG.EP.I..PKFKQRKGESD.AYIQRMQQEAQH.LFL | |
Retrocopy | IMRSRREMKNPTGNKKRKKAAQVAFRKTLEKEAKGVEPNIAVPKFKQRKGESD*AYIQRMQQEAQHMLFL |
Parental | SKNQATRQPEVQAAPKEKSEQKKAKKAFQKRRLDKVRRKKEEKAADRLEQELLRDTVKFGEVVLQPPELT |
SK.QAT.QPEVQ.APKEKSE.......FQKR.LDK...KKEEK.ADRLEQELLRDTVKFG.VVLQ.PELT | |
Retrocopy | SKSQATLQPEVQTAPKEKSELXXXXXGFQKRLLDKGWQKKEEKTADRLEQELLRDTVKFGKVVLQGPELT |
Parental | ARPRRSVSKDQPGRRSQMLRMLLSPGGVSQPLTASLARQRIVGEERERAMQAYR-VLKQRRQRLHRE--R |
.RP.RS.SKDQPGRRSQMLRMLLSP.GV.QPLTASLA.QRIVGEERE.A.QAYR..LKQ.R..LH.E... | |
Retrocopy | TRPWRSLSKDQPGRRSQMLRMLLSPRGVFQPLTASLAYQRIVGEEREWALQAYR<MLKQPRW-LHGE*XX |
Parental | PHLTSQKKPELQL |
..LTS.KKPE.QL | |
Retrocopy | XXLTSKKKPEPQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .92 RPM |
SRP007412_heart | 0 .00 RPM | 4 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .45 RPM |
SRP007412_liver | 0 .00 RPM | 7 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2661 |
Gorilla gorilla | retro_ggor_1857 |
Macaca mulatta | retro_mmul_1511 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000014878 | 1 retrocopy | |
Homo sapiens | ENSG00000185298 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009333 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008831 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002713 | 1 retrocopy | |
Mus musculus | ENSMUSG00000049957 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013830 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000008741 | 1 retrocopy |
retro_pabe_2312 ,
|
Pan troglodytes | ENSPTRG00000009767 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048712 | 1 retrocopy |