RetrogeneDB ID: | retro_pabe_2371 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:157752020..157752340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000005032 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MLLTRFEQKNGHLAQVEVDEVFGFMCHVTTEVPPHDAMPGGIVLLVKFLLLDMSRNVLLYVVFLQRLSSA |
MLLTRFEQKN..LA..EVDEVFGFMC.....VPP.DA.P.GIVL.VKF.LLDM..NVL.Y...LQ.LSS. | |
Retrocopy | MLLTRFEQKNSQLAHTEVDEVFGFMCDRVA*VPP*DAIPDGIVLPVKF-LLDMGHNVLFYDICLQCLSST |
Parental | LHRVLLHLFRHVRIFDHGLSVAHGYRGEGGWP-TATVSWGRC |
.H.VLLHLF..V.I........HG....GG.P.TA.VSWGRC | |
Retrocopy | FH*VLLHLF*RVHILHFSSCGYHG---AGGCP<TAKVSWGRC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .70 RPM |
SRP007412_heart | 0 .00 RPM | 1 .11 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .09 RPM |
SRP007412_liver | 0 .00 RPM | 1 .99 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000009268 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008793 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000001195 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000005032 | 6 retrocopies |
retro_pabe_1134, retro_pabe_1198, retro_pabe_1215, retro_pabe_1469, retro_pabe_2371 , retro_pabe_2459,
|
Tupaia belangeri | ENSTBEG00000008820 | 3 retrocopies |