>retro_pabe_3587
ATGACATTTGTGGATAAGTGCAAACTTAAGAGAGAGCGATTGGACAGAATTTCTGTAGGAATTCGCCTCCACATCATGAA
AGGCCCCCTGCACCCCTGCCCTGTGGTGGCGCTGCTGGACGGCCGCGACTGCATTGTGGATATGCACATCCTGAAGGACC
TGGCCACCGTGGCCTTCTGTGACGTGCAGTCCACGCAGGAGATCCACGACAAGGTTCTAAACAGAGTCGTGGGCGCCATG
ATGTACCACACCATAACCCCCACCAGGGAGGACCTGGCAAATTTCAAGGCCCTGAGAGTGATCGTGCGGGTTGGCAGTGG
CTATGACAACGTGAACATCAAGGCTGCTGGCGAGCTCGGAATTTCTGTGTGCAACATCCCGTCCGCAGCCGTGGAAGAGA
CAGCCGGCTCCACCATCTGCCACATCCTCAACATGCACTAGAGGAACACATGGCTGTAACAGGCACTGTGGGAAGGCAAG
CGGGTTCAGAGCGTGGAGCAGATCTGCGAGGTGGCCTCGGGAGTGGCCCCTGTTCGTGGGGAGACGCTGGGCCTCATCGG
CTACAGTCGCACGCAGCAGGCTTTTGAAGTTCCAGCCACCGCCTTTGGATTCAGCGTCATATTTTATTACCCCTACTTGC
AGGATGGGATCGAGCAGTCCCAGGGCGTGCAGAGGGTCTACACAAAGCAGGATTTGCTGTATCAGAGCGACTGCGTCTCC
TTGCACAGCAGTCTCAGCGAACATAAACACCACCTCATCAATGACTTTACCATAAAGCAGAAGAGGCAGGGAGCATTCCT
TGTGAACACAGCCCGTGGTGGCCTGGTGGATGAGAAAGCCTTAGCACAGGCCCTCAAGGAGGGCAAGATACGAGAGGCAG
CCCTCGACGTGAATGAGTCATAGCCCTTTAGCTTGGCTCAGGGTCCATTGAAGATGTCCCCAATCTCATCTGCTCTCCTC
ACACTGCCTGCTACAGCGAGCAGGCGTCACTGGAGATGAAGGAGGCAGCTGCCACCGAGATCCGCTGAGCCATCACAGGT
CCCATCCCAGGAAGCTTAAGAAACTGTGAACAAGGAATTCTTTGTCACATCTGTGCTTTGGTCAGTAACAGACCAGCAAG
CAATTCATCCA
ORF - retro_pabe_3587 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.31 % |
Parental protein coverage: |
84.94 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHE |
| M..VDK.K.KR.RLDRI..GIR..IM.GPLHP.P.VALLDGRDC.V.M.ILKDLATVAFCD.QSTQEIH. |
Retrocopy | MTFVDKCKLKRERLDRISVGIRLHIMKGPLHPCPVVALLDGRDCIVDMHILKDLATVAFCDVQSTQEIHD |
|
Parental | KVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC |
| KVLN..VGAMMYHTIT.TREDL..FKALRVIVR.GSGYDNV.IKAAGELGI.VCNIPSAAVEETA.STIC |
Retrocopy | KVLNRVVGAMMYHTITPTREDLANFKALRVIVRVGSGYDNVNIKAAGELGISVCNIPSAAVEETAGSTIC |
|
Parental | HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYD |
| HILN...RNTWL.QAL.EG.RVQSVEQI.EVASG.A..RGETLGLIG..RT.QA..V.A.AFGFSVIFY. |
Retrocopy | HILNMH*RNTWL*QALWEGKRVQSVEQICEVASGVAPVRGETLGLIGYSRTQQAFEVPATAFGFSVIFYY |
|
Parental | PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKA |
| PYLQDGIE.S.GVQRVYT.QDLLYQSDCVSLH..L.EH.HHLINDFTIKQ.RQGAFLVN.ARGGLVDEKA |
Retrocopy | PYLQDGIEQSQGVQRVYTKQDLLYQSDCVSLHSSLSEHKHHLINDFTIKQKRQGAFLVNTARGGLVDEKA |
|
Parental | LAQALKEGRIRGAALDVHESEPFSFAQGPLK-DAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRI |
| LAQALKEG.IR.AALDV.ES.PFS.AQGPLK.D.PNLIC.PHTA.YSEQASLEM.EAAATEIR.AITG.I |
Retrocopy | LAQALKEGKIREAALDVNES*PFSLAQGPLK<DVPNLICSPHTACYSEQASLEMKEAAATEIR*AITGPI |
|
Parental | -PESLRNC-VNKEFFVTSAPWSVIDQQAIHP |
| .P..L....VNKEFFVTS..WSV.DQQAIHP |
Retrocopy | <PRKLKKL<VNKEFFVTSVLWSVTDQQAIHP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
7 .96 RPM |
SRP007412_cerebellum |
0 .00 RPM |
15 .81 RPM |
SRP007412_heart |
0 .00 RPM |
3 .97 RPM |
SRP007412_kidney |
0 .00 RPM |
15 .51 RPM |
SRP007412_liver |
0 .12 RPM |
2 .26 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_3587 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_3587 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_3587 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
15 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Canis familiaris | ENSCAFG00000012775 | 1 retrocopy |
|
Callithrix jacchus | ENSCJAG00000012539 | 2 retrocopies |
|
Homo sapiens | ENSG00000175029 | 1 retrocopy |
|
Oryctolagus cuniculus | ENSOCUG00000007076 | 1 retrocopy |
|
Pongo abelii | ENSPPYG00000002746 | 10 retrocopies |
retro_pabe_1706, retro_pabe_1710, retro_pabe_1711, retro_pabe_1719, retro_pabe_1737, retro_pabe_1750, retro_pabe_1773, retro_pabe_3228, retro_pabe_3230, retro_pabe_3587 ,
|