RetrogeneDB ID: | retro_pcap_55 | ||
Retrocopy location | Organism: | Hyrax (Procavia capensis) | |
| Coordinates: | GeneScaffold_3023:96512..96806(-) | ||
| Located in intron of: | ENSPCAG00000016991 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C2orf61 | ||
| Ensembl ID: | ENSPCAG00000010167 | ||
| Aliases: | None | ||
| Description: | chromosome 2 open reading frame 61 [Source:HGNC Symbol;Acc:26850] |
Retrocopy-Parental alignment summary:
>retro_pcap_55
GACAAACCACGGGCAAGCCCTAGCTCACTGGTTTATAAAGACCAGAAGCCAACCCAGAAGCCATCATCTTTTGAAAGAGA
AGGATGGTGGAGATTGGCACTAACCAATACACCTATACCTGGCACATGCCACTTGAGAACTTTTCTTGAAGAAGTTCTAT
TAAATCCAGTCACGGCAACCTACAACTTTAAAAACAAAGGAAGGAAAAGGCCACCTCTCGTACTCAGAAACAATCCACTA
ATCAATGACATTTCCCAGTATGGGCCTCCTGGCTCGCTGGAGTTGTTAAAGAAG
ORF - retro_pcap_55 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.75 % |
| Parental protein coverage: | 68.75 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DQPVTTLSTATVRDTLKPARKPSCFEREGWWRSALTNTPIPGTYHLRTFLEEALLNPVAATYNFKNEGRK |
| D.P....S.....D..KP..KPS.FEREGWWR.ALTNTPIPGT.HLRTFLEE.LLNPV.ATYNFKN.GRK | |
| Retrocopy | DKPRASPSSLVYKDQ-KPTQKPSSFEREGWWRLALTNTPIPGTCHLRTFLEEVLLNPVTATYNFKNKGRK |
| Parental | KPPLVLRNNPVINDIPQYVPPDSLELLKK |
| .PPLVLRNNP.INDI.QY.PP.SLELLKK | |
| Retrocopy | RPPLVLRNNPLINDISQYGPPGSLELLKK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Procavia capensis was not studied using RNA-Seq expression data.
Procavia capensis was not studied using ChIP-Seq data.
Procavia capensis was not studied using EST data.
Procavia capensis was not studied using FANTOM5 data.
retro_pcap_55 was not experimentally validated.
Retrocopy orthology:
Procavia capensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Procavia capensis | ENSPCAG00000010167 | 1 retrocopy |
retro_pcap_55 ,
|