RetrogeneDB ID: | retro_pcap_88 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_5206:65408..66278(-) | ||
Located in intron of: | ENSPCAG00000005295 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPR | ||
Ensembl ID: | ENSPCAG00000010462 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein R [Source:HGNC Symbol;Acc:5047] |
Percent Identity: | 51.32 % |
Parental protein coverage: | 51.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV-TVEWADPVEEPDPEVM |
.T.GL.DVILYHQ.D...K...FC...YE..............GKV.VWG.V..TVEWADP.E.PD.E.. | |
Retrocopy | VTDGLTDVILYHQSDSNEKTY-FCSPKYERSQNSCAGKT*V--GKVRVWGSVG<TVEWADPIEDPDREIV |
Parental | A-KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKKIEGEEIEI |
A...K.LFV.NL..TVTE.ILEK.FS.FGKLE.V.KLKDYAF.HF.....A.KAM.EMNGK..EGE.IEI | |
Retrocopy | A<NGKMLFVCNLVSTVTEGILEKAFSQFGKLE*VNKLKDYAFIHFDEQDNAIKAMEEMNGKNLEGECIEI |
Parental | VLAKPPDKKRKERQAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYY |
V.AKP.D.KRK.........R.S..Y.DY....PP...P...G.G..GGR.GYGY.PDY.G.ED.Y..YY | |
Retrocopy | VFAKPTDQKRKKKSSEVSSKR<SQVYADYHSYGPPCLLPSTSGQG-CGGRCGYGYTPDY*GCEDHY-NYY |
Parental | GYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGG |
GYDYH.Y....EDP.YGY.D...V.GRG....G.....P.R...A.PP..RA.YSQ.G.P.G..RG.... | |
Retrocopy | GYDYHNY-CECEDPHYGYKD-FQVIGRGRSSKGARGAAPFRDCRAVPPFDRADYSQTGGP-GSARGIPCV |
Parental | RGGPAQQQRGRGSRGARGNRGG |
RG......R...S......RGG | |
Retrocopy | RGEKVLKNRELWSGKTGQGRGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000125944 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013250 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010970 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016144 | 1 retrocopy | |
Mus musculus | ENSMUSG00000066037 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009179 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010462 | 1 retrocopy |
retro_pcap_88 ,
|
Pan troglodytes | ENSPTRG00000000324 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002251 | 1 retrocopy |