>retro_pper_26
ATGGCTTTAATGGAAAGAACTCCAGGCAGATGGCCACGTCCTGTTTGGCATGCTCCTTGGAAGATGTACAAGGTCATTAG
CGGCCACTTGGGATGGGTACGATCCATTGCCTTTGATCCAAGCAACAAATGGTTCTGCACCGGCTCTGCAGATCGCACGA
TCAAGATATGGGATGTAGGAACCGGAACCCTACAGCTCTCACTGACAAGACACATTGAACAAGTACGAGGACTTGCTGTT
AGCAGCAGGCACACCTACATGTTCTCTGCCGGCGATGACAAGCTGGTTAAATGCTGGGACCTCGAACAGAACAAGGTTGT
CCGTTCATATCATGGTCATCTGAGCGGTGTTTACTGCTTGGCGGTTCATCCCACGCTTGATATTTTACTCACCGGTGGAC
GCGATTCTGTGTGCCGGGTTTGGGATATTCGAAGCAAGGTGCAAGTTTTTGCATTGTCGGGGCATGACGACACAGTTTGC
TCAGTTTTCACTCGACCGACAGATCCACAAGTTGTCACTGGCTCTCATGACTCGACCATCAAGCTCTGGGACTTGAGGTA
TGGGAAAACAATGTCAACACTTACACACCATAAGAAATCTGTGCGTGCAATGGCGCAACATCCTAAGGATATCAATTCTT
TCGCATCTGTATCCGCTGACAACGTGAAGAAGTTCAACTTTCCGAACGGCGAATTTTTGCACAACATGCTGTCTCAGCAG
AAAACTATAGTTAATGCAATGGCTGTGAATCGGGATGGTGTCATGGCAACTGGAGGTGACAGTGGGAGTGTGTGGTTTTG
GGATTGGAAGAGCGGTCATAATTTTCAACAATCGCAAACAATTGCGCAGCCTGGCTCCCTGGATGGTGAAGCTGCTGTAT
ATGCTCTTTCCTTTGATAGAACTGGTACAAGGTTGGTGACTTGCGGAGCTGATAAGACGATCAAAATGTGGAAAAAGGAC
CAAAATGCCACTCCAGAAACCCATCCTCTCAATTTCAAGCCTCCTAAAGATATTCGACGGTTCTAG
ORF - retro_pper_26 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90. % |
Parental protein coverage: |
71.67 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ALMERIPSRWPRPVWHAPWKIYRVISGHLGWVRSIAFDPSNKWFCTGSADRTIKIWDVGTGTLQLSLTGH |
| ALMER.P.RWPRPVWHAPWK.Y.VISGHLGWVRSIAFDPSNKWFCTGSADRTIKIWDVGTGTLQLSLT.H |
Retrocopy | ALMERTPGRWPRPVWHAPWKMYKVISGHLGWVRSIAFDPSNKWFCTGSADRTIKIWDVGTGTLQLSLTRH |
|
Parental | IEQIRGLAVSSRHTYMFSAGDDKLVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVW |
| IEQ.RGLAVSSRHTYMFSAGDDKLVKCWDLEQNKV.RSYHGHLSGVYCLA.HPTLD.LLTGGRDSVCRVW |
Retrocopy | IEQVRGLAVSSRHTYMFSAGDDKLVKCWDLEQNKVVRSYHGHLSGVYCLAVHPTLDILLTGGRDSVCRVW |
|
Parental | DIRSKMQVHALSGHDNTVCSVFTRPTDPQVITGSHDSTIKFWDLRYGKTMSTLTHHKKSVRAMAQHPKE- |
| DIRSK.QV.ALSGHD.TVCSVFTRPTDPQV.TGSHDSTIK.WDLRYGKTMSTLTHHKKSVRAMAQHPK.. |
Retrocopy | DIRSKVQVFALSGHDDTVCSVFTRPTDPQVVTGSHDSTIKLWDLRYGKTMSTLTHHKKSVRAMAQHPKDI |
|
Parental | NCFASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEDGVMATGGDNGSVWFWDWKSGHNFQQSQTI |
| N.FAS.SADN.KKFN.P.GEFLHNMLSQQKTI.NAMAVN.DGVMATGGD.GSVWFWDWKSGHNFQQSQTI |
Retrocopy | NSFASVSADNVKKFNFPNGEFLHNMLSQQKTIVNAMAVNRDGVMATGGDSGSVWFWDWKSGHNFQQSQTI |
|
Parental | VQPGSLDSEAAIYALSYDVTGTRLVSCEADKTIKMWKQDENATPETHPLNFRPPKDIRRF |
| .QPGSLD.EAA.YALS.D.TGTRLV.C.ADKTIKMWK.D.NATPETHPLNF.PPKDIRRF |
Retrocopy | AQPGSLDGEAAVYALSFDRTGTRLVTCGADKTIKMWKKDQNATPETHPLNFKPPKDIRRF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_26 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.