>retro_pper_52
ATGACGAGAAGAGACAAACCTCCCCCGCCTTCAAGCTCCCGAAGGCGCAGCGAAAGAAGAGCTTGTAGAAGAAGACATGT
TGCTGATGGTGGCGCTGACAGCTCTGTCCAACTGCCTCGGCCATCGGCACCGAAGACAATTTACAGTTACTTAGAAGGGT
TGTACGAGAGAAGAGGATCCGACCGAGAGGAGGCACTCGCTTCAATAATTGGGGTGTTAAATAGCAGATTAGAGCATGAC
TTTCTAGAAAATAATTTCGCAAGTTTTCTATACAGGGGCTTGAATTCCTTCAAAAAGGGTTCCTCCAAGGAGAAGCAGCT
ATCACTTCATCTCGTAGGGTTGCTTGCCATGATCGTTGGCTATGAGGATAAAGTGTCTGAAGTGTACAGGGAGTTGCTTC
CGGTTCTTTCTAAAGCTCCGAAATCTGGAACCACGGCAGTGAAGGTATTAGACTGTTTGGGCATTGTGGCTTTTTTTGGT
GCAACCAACTCAGAGGATATTCAAAATGCAATGCAAATTATATGGAAGTTCATTCACGCTGATCAATCTGATGCAAATGA
AGAAAAGCATTCGGCGGCGGTCCTAGTTGCTGCAATAAATGCTTGGTTGTTTCTACTTACGAGCGTGGAAGGATGGAGAC
TCAGACACAACAACTGGAATGGAGCCATTGATTACTTCTCAACCCTGTTGTTAAAGCATGATGATAAATTAGTCCGTGTG
GCTGCTAGTGAAGCACTAGCTTTGATTTTCGAAACCGGTAGTTTGGAAAAGTTCTGGGGAGAAGGAAAGGAACGTAGCTA
TTCACATATGCAACAATTACTGAGGGAGAGTATCGTTGCAAACGACATCCGCGAAGTTGTGAAATATTTTGGGAATTTTC
AATGCCCGGGAACATCATTGACAGTCAATGGAAAAGATCTAAAGCTGTCATCATGGTATCAGAAGATCCAGTTACAGTTT
TTGAAGGGTTTTTTAGCTGAAGGGTTCGAACTACAAGTGAAGGAAAATGAAAAATTACAGAATCTGTTCGAGTTCAATCC
ACATCGAATTATAAATTCAGGCCGAGAATTGTATGTGTCCACCACTGATAAAATCAGTGTCTCTTTCTTTTTACCTGAAG
AAAGAGACCCTGAAAAATTAACAAAGGAAGATCGAAAGAAACAAAAGATTTGGAGAAACTCTGTTCTCAAGAAGGCACAG
ACACAATTAATGACCAAACATCGCCGTTTGTCTGAAGAAATGAACCGCTCCGACTATGATTGA
ORF - retro_pper_52 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
67.92 % |
Parental protein coverage: |
85.66 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RWAGRKPVLAAGDDEGYEEVPRPSQPKRLCHYLEVLYEKRGSNREEALASIIEVLTCRLENDYLEENFAS |
| R.A.R....A.G........PRPS.PK....YLE.LYE.RGS.REEALASII.VL..RLE.D.LE.NFAS |
Retrocopy | RRACRRRHVADGGADSSVQLPRPSAPKTIYSYLEGLYERRGSDREEALASIIGVLNSRLEHDFLENNFAS |
|
Parental | FLYRGLNSLKIGSSKEKQLSLHVIGLLAIIICCEDKLSEVYRVLLPVLSESLKSGTTTLKMLNCLAIVGF |
| FLYRGLNS.K.GSSKEKQLSLH..GLLA.I...EDK.SEVYR.LLPVLS...KSGTT..K.L.CL.IV.F |
Retrocopy | FLYRGLNSFKKGSSKEKQLSLHLVGLLAMIVGYEDKVSEVYRELLPVLSKAPKSGTTAVKVLDCLGIVAF |
|
Parental | FGSTNSEETEGAMQIIWKFIHPESVNDVNTKKHSPEVLVAAIYSWLFLLTSMEGWRLSHNSWNGAVCYFS |
| FG.TNSE....AMQIIWKFIH.....D.N..KHS..VLVAAI..WLFLLTS.EGWRL.HN.WNGA..YFS |
Retrocopy | FGATNSEDIQNAMQIIWKFIHADQ-SDANEEKHSAAVLVAAINAWLFLLTSVEGWRLRHNNWNGAIDYFS |
|
Parental | N-LLEHGDKLVRVAACEALALIFETGNLDK |
| ..LL.H.DKLVRVAA.EALALIFETG.L.K |
Retrocopy | TLLLKHDDKLVRVAASEALALIFETGSLEK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_52 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.