RetrogeneDB ID: | retro_pper_64 | ||
Retrocopy location | Organism: | Peach (Prunus persica) | |
| Coordinates: | scaffold_5:8989594..8989858(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | PRUPE_ppa018121mg | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_pper_64
CTCTCTCTCCTCTACACATCTATACCAATTTGCAGCTCCAAATCTAAGGAAATTAAAGCCAAAATTCGAGCCAAAGTGAG
CCCAAAAATGGGCTGTTTCAAAATAGTAAATTTGGGGGTCTTTTTCGGTGGATTCCAACCGCCACAGCTCAGGTTTTCAA
GTGACAAAAAGCTTCGTTCAAGGGTTTTAGAGGTGGAATTGATCGTCGACCCAAGGCACCCGGGGCCAGGCAGACCCGCA
GGAGGGATCTTCAAGAGGTCCAGC
ORF - retro_pper_64 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.27 % |
| Parental protein coverage: | 57.52 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LSSLFKASYNFRSKPPSLSSILSQTRAQKLGCFEQWLFVVFSDQFRPPQLRFSRDKKLRSRALEMELIVE |
| LS.L........SK..............K.GCF......VF...F.PPQLRFS.DKKLRSR.LE.ELIV. | |
| Retrocopy | LSLLYTSIPICSSKSKEIKAKIRAKVSPKMGCFKIVNLGVFFGGFQPPQLRFSSDKKLRSRVLEVELIVD |
| Parental | PRHPGPGRPVGGTSRRSS |
| PRHPGPGRP.GG...RSS | |
| Retrocopy | PRHPGPGRPAGGIFKRSS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_64 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Prunus persica | PRUPE_ppa018121mg | 2 retrocopies |
retro_pper_64 , retro_pper_72,
|