RetrogeneDB ID: retro_pper_69

Retrocopy location

• Organism: Peach (Prunus persica)
• Coordinates: scaffold_7:1929122..1929848(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: PRUPE_ppa025650mg
• Aliases: None
• Description: None

Sequence

>retro_pper_69
ATGAACCCAGGTGGGATCGGAGTGCATAAGGAGGATCTGGTGGGTATGGAGGATGATAAACTCACAATAGAGGATGATGA
TTTTGAAGTCTTAGAGGGTACTCGTGGTCTTTGCATACGCTTTTGCACCAAGGTGAAGGAACGACTCTACCGTCCCTGGC
GGAATGCAATTATAATCAAACTAATGGGCAGGACCCATACATACAACTTCCTATTAGCTCGTCTAAGACAAAAATGGAGT
CTTTTGAAAGGTGCAATGAGTTTGATTGACCTGGAAAACAACTTCTATGTTGTACGCTTTGTGCTTGAGGAAGACATGAG
GTACGTTTTTTCTGGGGGACCATGGGTAATTGCTGGGCAATCTTTAGTGATGCAGAGATGGAAACTAGGATTTGATCCTA
ATGAAGCTACTATTACTCGTATGGCTGTGCGGGTGAGTATTACAAGTTTACATGTTGAATGGTTTAATCCTGAGGCAATT
AAACGTATTGGGGACCTTATTGGTGTGACTTATCGCATTGATACTCACACAGTTGCTCAAGCCCGTGGCAAATATGCTCG
AATATGTATTGAACTGGATTTGACCAAACCGTTAATTGCTAATGTGCAAGTTGAGAATAATTGGTATGCCATAGAATATG
AAGGACTCCATTTGGTCTGCTTTGGCTGTGGTATTTATGGCCATAATAGAAACCAATGTCCATATGAAATTAGAGTCCAT
GATGGT

Alignment

ORF - retro_pper_69 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.08 %
• Parental protein coverage: 95.56 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNPGGIGVHKEDLVGMEEDKLTIEDDDFLVSEGTRGPCIRFCTKVKERLYRPWRNAIIIKLMGRTHTYSF
          MNPGGIGVHKEDLVGME.DKLTIEDDDF.V.EGTRG.CIRFCTKVKERLYRPWRNAIIIKLMGRTHTY.F
Retrocopy MNPGGIGVHKEDLVGMEDDKLTIEDDDFEVLEGTRGLCIRFCTKVKERLYRPWRNAIIIKLMGRTHTYNF

Parental  LLARLRQKWSLLKGAMSLIDLENNFYVVRFVLEDDMRYVFSREPWVIAGQSLVMQRWKLGFDHN-STITR
          LLARLRQKWSLLKGAMSLIDLENNFYVVRFVLE.DMRYVFS..PWVIAGQSLVMQRWKLGFD.N..TITR
Retrocopy LLARLRQKWSLLKGAMSLIDLENNFYVVRFVLEEDMRYVFSGGPWVIAGQSLVMQRWKLGFDPNEATITR

Parental  MAVWVRITGLHVEWFNPEAIKRIGDLIGVTYRIDTLTVAQARGKYSRICIELDLTKPLIANVQVEVKKY-
          MAV.V.IT.LHVEWFNPEAIKRIGDLIGVTYRIDT.TVAQARGKY.RICIELDLTKPLIANVQVE...Y.
Retrocopy MAVRVSITSLHVEWFNPEAIKRIGDLIGVTYRIDTHTVAQARGKYARICIELDLTKPLIANVQVENNWYA

Parental  ---EGLHLVCFGCGIYGHNRNQCPSEIRVHDG
          ...EGLHLVCFGCGIYGHNRNQCP.EIRVHDG
Retrocopy IEYEGLHLVCFGCGIYGHNRNQCPYEIRVHDG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Prunus persica was not studied using RNA-Seq expression data.

ChIP-Seq

Prunus persica was not studied using ChIP-Seq data.

EST

Prunus persica was not studied using EST data.

TSS

Prunus persica was not studied using FANTOM5 data.

Lab

retro_pper_69 was not experimentally validated.

Homology

Retrocopy orthology:

Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Prunus persica	PRUPE_ppa025650mg	2 retrocopies	retro_pper_25, retro_pper_69 ,