RetrogeneDB ID: retro_psin_27

Retrocopy location

• Organism: Chinese softshell turtle (Pelodiscus sinensis)
• Coordinates: JH205199.1:645430..645742(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSPSIG00000006688
• Aliases: None
• Description: None

Sequence

>retro_psin_27
CAGAGAGCACGAGGCAGCCCGTCTCCTTACTCTCCTCTGTCCCTCTTTCTCCCCTCAGAGATACACTTTGTTGACCGGCA
CCGAGAACAGCTCATCCAGCGAGTAACTTTGGTTGAGGGCATCCTGGACAAGCTGCTGGGCAGCGTGCTGGACCACGAGC
AGTACCAGACCATTCTCGCCGAGAGAACCAACCCCATGAGAATGCGGAAGCTCTACGAGTTCATGCTGAGCTGGAACAGG
TACTGCAAAGACCAGCTCTACAAGGCACTGGCGGACAAATGCAAGTTCCTCGTCGCAGACCTGGAAGGGAAA

Alignment

ORF - retro_psin_27 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.56 %
• Parental protein coverage: 55.1 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EKGRGSFPTPIWSGAGCWAPPALREHFVSRHRVELIQRVCMVDSIIDMLRGTVLDEEQYESIRAEKTNPE
          ...RGS.P.P..S......P.....HFV.RHR..LIQRV..V..I.D.L.G.VLD.EQY..I.AE.TNP.
Retrocopy QRARGS-PSP-YSPLSLFLPSEI--HFVDRHREQLIQRVTLVEGILDKLLGSVLDHEQYQTILAERTNPM

Parental  KMRKLYEFMPSWNWDCKERLYQALKAKHKFLIAELERK
          .MRKLYEFM.SWN..CK..LY.AL..K.KFL.A.LE.K
Retrocopy RMRKLYEFMLSWNRYCKDQLYKALADKCKFLVADLEGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Pelodiscus sinensis was not studied using RNA-Seq expression data.

ChIP-Seq

Pelodiscus sinensis was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_psin_27 retrocopy.

TSS

Pelodiscus sinensis was not studied using FANTOM5 data.

Lab

retro_psin_27 was not experimentally validated.

Homology

Retrocopy orthology:

Pelodiscus sinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Pelodiscus sinensis	ENSPSIG00000006688	1 retrocopy	retro_psin_27 ,