RetrogeneDB ID: | retro_pvam_1000 | ||
Retrocopy location | Organism: | Megabat (Pteropus vampyrus) | |
| Coordinates: | scaffold_21609:3478..3798(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PYURF | ||
| Ensembl ID: | ENSPVAG00000003575 | ||
| Aliases: | None | ||
| Description: | PIGY upstream reading frame [Source:HGNC Symbol;Acc:44317] |
Retrocopy-Parental alignment summary:
>retro_pvam_1000
AGTTGCAGCTGGCTCACCTCAGCGATGCATGGGGACACACACGCCCTCCTCTGTGGTTGCCTCTAGGTGTCTGCGAGTGT
AGAGGTTATGGCCATCTTCCCAGAAGAGCAAGAGAACTGGGGAACCACACAGCACCTTTAACCTGTTCGTGGTGTGCCCG
CTTTCCAAGAAGCCGCTCAGATATGAAGCATAGACAAATGAATTGATTAATGAAGAGTTGGGAATAGCCTATCCAATTAT
TGATGGAATTCTTCATATGATACCACAAGAAGCTAGGATGACACATCAAAATAAGAAGCAAGAAGATGATGGAGCAGCAC
ORF - retro_pvam_1000 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.39 % |
| Parental protein coverage: | 96.49 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | ACGKLASALRR-TRAPASAVARRCLRASGSRLSADKSERTGEPHRTFDLSLLEFLVCPLSKKPLRYEAST |
| .C..L.SA....T..P.S.VA.RCLR......S..KS.RTGEPH.TF.L....F.VCPLSKKPLRYEA.T | |
| Retrocopy | SCSWLTSAMHG>THTPSSVVASRCLRV*RLWPSSQKSKRTGEPHSTFNL----FVVCPLSKKPLRYEA*T |
| Parental | NELINEELGIAYPIIDGIPNMXXXXXXMTRQNKKQEE-MEQH |
| NELINEELGIAYPIIDGI..M......MT.QNKKQE..MEQH | |
| Retrocopy | NELINEELGIAYPIIDGILHMIPQEARMTHQNKKQED>MEQH |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1000 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pteropus vampyrus | ENSPVAG00000003575 | 1 retrocopy |
retro_pvam_1000 ,
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