RetrogeneDB ID: | retro_pvam_12 | ||
Retrocopy location | Organism: | Megabat (Pteropus vampyrus) | |
| Coordinates: | scaffold_4728:63087..65046(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSPVAG00000004439 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | KCNA7 | ||
| Ensembl ID: | ENSPVAG00000009577 | ||
| Aliases: | None | ||
| Description: | potassium voltage-gated channel, shaker-related subfamily, member 7 [Source:HGNC Symbol;Acc:6226] |
Retrocopy-Parental alignment summary:
>retro_pvam_12
ATGGAGGTTGCAATGGTGAGTGCGGAGAGCTCAGGGTGCAACAGTCACATGCCTTATGGTTATGCAGCCCAGGCCCGGGC
CCGGGAGCGGGAGAGGCTGGCTCACTCCAGGGCAGCGGCGGCAGCCGCTGTCGCAGCCGCCACGGCTGCTGTGGAAGGCA
GCGGGGGTTCTGGAGGGGGCTCCCACCACCACCACCAGTCTCGGGGATCCTGCACCTCCCACGACCCTCAGAGCAGCCGG
GGTAGTCGGAGAAGGAGGCGACAGAGGCCTGAGAAGAAGAAAGTCCACCACCGTCCCAGCAGCTTTCCTCATTGCTCCGA
CCTGATGCCCAGTGGCTCTGAGGAGAAGATCCTGAGAGAACTGAGTGAGGACGAGGGAGAGGAGGAGGAAGATGAGGAGG
AGGAAGAAGGGAGGTTTTACTACAGCGAAGATGACCACGGCGATGAGTGTTCCTACACAGACCTGCTGCCTCAGGACGAC
GGGGGTGGTGGCTACAGCTCGGTCCGCTACAGTGACTGTTGTGAACGTGTGGTGATAAATGTTTCAGGCCTGCGCTTTGA
GACCCAGATGAAAACTCTGGCCCAGTTTCCAGAGACCTTGTTGGGGGACCCTGAGAAGAGGACTCAGTACTTTGACCCTT
TGCGTAACGAGTATTTCTTTGACAGGAACAGGCCCAGCTTTGATGCCATCTTATATTATTACCAGTCAGGAGGCCGCCTG
AAGAGGCCCGTCAACGTCCCCTTTGATATCTTCACTGAGGAGGTGAAGTTCTATCAGTTGGGAGAGGAGGCCTTGCTCAA
GTTTCGGGAGGATGAGGGCTTTGTGAGAGAGGAGGAAGACAGAGCCTTGCCAGAGAATGAATTTAAAAAGCAAATTTGGC
TTCTCTTTGAGTATCCGGAGAGCTCCAGTCCAGCAAGGGGCATAGCCATCGTCTCTGTCTTGGTCATCTTAATCTCCATT
GTCATTTTCTGCCTGGAAACCTTGCCTGAGTTTAGGGACGACAGGGACCTCATCATGGCACTGAGTGCGGGCGGGCACAG
TGGGCTGCTGAACAACACCTCGGCGCCCCACCCGGAGAACTCAGGGCACACCATATTCAACGACCCCTTCTTCATCGTGG
AGACAGTCTGTATTGTTTGGTTTTCCTTTGAGTTTGTGGTTCGCTGTTTTGCTTGTCCCAGCCAAGCGCTCTTCTTCAAA
AACATCATGAACATCATTGACATTGTCTCCATTTTGCCTTACTTCATTACACTGGGCACCGATCTGGCCCAGCAACAGGG
GGGCGGCAACGGTCAGCAGCAGCAGGCCATGTCCTTTGCCATCCTCAGGATCATTCGTTTGGTCCGAGTATTCCGGATCT
TCAAACTCTCCAGGCACTCCAAAGGCCTGCAGATCCTGGGCCACACCCTAAGAGCCAGCATGCGGGAACTGGGCCTTCTG
ATCTTCTTCCTCTTCATTGGGGTCATCCTGTTTTCCAGCGCTGTGTATTTTGCGGAGGCGGATGAGCCTACGACCCACTT
CCAAAGCATCCCAGATGCGTTTTGGTGGGCTGTGGTGACCATGACAACTGTGGGCTATGGGGACATGAAGCCCATCACTG
TGGGGGGCAAGATCGTGGGGTCCCTGTGTGCCATTGCGGGTGTCTTAACCATTGCTTTGCCAGTGCCAGTGATTGTCTCT
AACTTTAACTATTTCTACCACAGAGAGACTGAAAATGAGGAACAGACACAGCTGACACAGAACGCAGTCAGTTGCCCATA
CCTCCCTTCTAATTTGCTGAAGAAATTTCGGAGCTCTACTTCTTCTTCCCTGGGGGACAAGTCAGAGTATCTAGAGATGG
AAGAAGGAGTTAAGGAATCTCTCTGTGCAAAGGAGGAGAAGTGTCAGGGGAAGGGGGATGACAGTGAGACAGATAAAAAC
AACTGTTCTAACGTGAAGGCTGTGGAGACCGATGTGTGA
ORF - retro_pvam_12 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.64 % |
| Parental protein coverage: | 87.36 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | CCERVVLNVAGLRFETRARTLGRFPDTLLGDPARRRRFYDGARREYFFDRHRPSFDAVLYYYQSGGRLRR |
| CCERVV.NV.GLRFET...TL..FP.TLLGDP..R....D..R.EYFFDR.RPSFDA.LYYYQSGGRL.R | |
| Retrocopy | CCERVVINVSGLRFETQMKTLAQFPETLLGDPEKRTQYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLKR |
| Parental | PAHVPLDVFLEEVAFYGLGAAALARLREDEGCPVPPE-RPLPRRAFARQLWLLFEFPESSQAARVLAVVS |
| P..VP.D.F.EEV.FY.LG..AL...REDEG.....E.R.LP...F..Q.WLLFE.PESS..AR..A.VS | |
| Retrocopy | PVNVPFDIFTEEVKFYQLGEEALLKFREDEGFVREEEDRALPENEFKKQIWLLFEYPESSSPARGIAIVS |
| Parental | VLVILVSIVVFCLETLPDFRDDRDSPGLAAVAVPAGPSPRLNG-SSPVPGPLPRTPFDDPFF-VETLCIC |
| VLVIL.SIV.FCLETLP.FRDDRD...L.......G.S..LN..S.P.P.....T.F.DPFF.VET.CI. | |
| Retrocopy | VLVILISIVIFCLETLPEFRDDRD---LIMALSAGGHSGLLNNTSAPHPENSGHTIFNDPFFIVETVCIV |
| Parental | WFSFELLVRLLTCPSKA--FKNVMNLID-VAILPYLGAMGTELARHRGVG----QRAMSLAILRVIRLVR |
| WFSFE..VR...CPS.A..FKN.MN.ID.V.ILPY....GT.LA...G.G....Q.AMS.AILR.IRLVR | |
| Retrocopy | WFSFEFVVRCFACPSQALFFKNIMNIIDIVSILPYFITLGTDLAQQQGGGNGQQQQAMSFAILRIIRLVR |
| Parental | VFRIFKLSRHSKGLQILGQTLRASMRELGILIFFLFIGVVLFSSAVYFAEVDRADSNFSSIPESF-WAVV |
| VFRIFKLSRHSKGLQILG.TLRASMRELG.LIFFLFIGV.LFSSAVYFAE.D.....F.SIP..F.WAVV | |
| Retrocopy | VFRIFKLSRHSKGLQILGHTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPTTHFQSIPDAFWWAVV |
| Parental | TMTTVGYGDMAPVTVGGKIVGSLCAIAGVLTISLPVPVIVSNFSYFYHRETEGEE |
| TMTTVGYGDM.P.TVGGKIVGSLCAIAGVLTI.LPVPVIVSNF.YFYHRETE.EE | |
| Retrocopy | TMTTVGYGDMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETENEE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_12 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pteropus vampyrus | ENSPVAG00000009577 | 1 retrocopy |
retro_pvam_12 ,
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