RetrogeneDB ID: retro_pvam_1475

Retrocopy location

• Organism: Megabat (Pteropus vampyrus)
• Coordinates: scaffold_9551:13695..14209(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKRD39
• Ensembl ID: ENSPVAG00000007111
• Aliases: None
• Description: ankyrin repeat domain 39 [Source:HGNC Symbol;Acc:28640]

Sequence

>retro_pvam_1475
GATGGCCCCTACTGTGCCCAATCCCGTGTGGCATCCAGCGTGTGGCAGACGCTGGATGAGATGGACTTTGAAAGGGGGAT
CTGGTCGGCAGCCCTGAATGGAGACATGGGTCGAGTGAAATATTTAATTCGGAAGGCGACGGACCCTAGTCAACCTGGAC
TTGGCCAGTTGCACCACTCTGCACTATGCCAGTGTGCGTTATGCTGTATGACAGTTCCTGCTGGAAAGAGGGAGCAAGTG
TGACGCCCAGACACATGGGGGTGCCAGTGCTCTGCCCCGGGCCAGCTACTGTGGGCACACTGAGATCACATGGCTTCTGC
TGTCACTTGAGTTTAACCCCAAGCTGGTAGATAACAAGGCACAACCAGTCTACACTGCTGAGAAAGGTCATGTGAGCGTC
TGCTCCTTCCTGTTGCAACACTGCCCAGCTCTGAAGGCCTTCTGGGATTGGAAGGCACGACTAGCATATGACCTGCTACC
TTGAAGCTATGACCTGAAAGACCTGTTGGCCAGT

Alignment

ORF - retro_pvam_1475 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.61 %
• Parental protein coverage: 95.6 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DGPCCAHSGAAPGARQTLDEMDFERGIWSAALNGD-GRVRYLIQKAADPSQR-DSAGYTALHYASRNGHY
          DGP.CA.S..A....QTLDEMDFERGIWSAALNGD.GRV.YLI.KA.DPSQ..D.A..T.LHYAS....Y
Retrocopy DGPYCAQSRVASSVWQTLDEMDFERGIWSAALNGDMGRVKYLIRKATDPSQP>DLASCTTLHYASVR--Y

Parental  AVCQFLLENGAKCDAQTHGGATALHRASYCGHTDIARLLLSHGSNPRLVDDDGMTSLHKAAEKGHMDICS
          AV.QFLLE.G.KCDAQTHGGA.AL.RASYCGHT.I..LLLS...NP.LVD..........AEKGH...CS
Retrocopy AV*QFLLERGSKCDAQTHGGASALPRASYCGHTEITWLLLSLEFNPKLVDNKAQPVY--TAEKGHVSVCS

Parental  LLLQHSPALKAVRDRKARLACDLLPCNSDLQDLLAS
          .LLQH.PALKA..D.KARLA.DLLP...DL.DLLAS
Retrocopy FLLQHCPALKAFWDWKARLAYDLLP*SYDLKDLLAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Pteropus vampyrus was not studied using RNA-Seq expression data.

ChIP-Seq

Pteropus vampyrus was not studied using ChIP-Seq data.

EST

Pteropus vampyrus was not studied using EST data.

TSS

Pteropus vampyrus was not studied using FANTOM5 data.

Lab

retro_pvam_1475 was not experimentally validated.

Homology

Retrocopy orthology:

Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Pteropus vampyrus	ENSPVAG00000007111	1 retrocopy	retro_pvam_1475 ,