RetrogeneDB ID: | retro_pvam_400 | ||
Retrocopy location | Organism: | Megabat (Pteropus vampyrus) | |
| Coordinates: | GeneScaffold_2932:186393..186806(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SLC35E1 | ||
| Ensembl ID: | ENSPVAG00000004322 | ||
| Aliases: | None | ||
| Description: | solute carrier family 35, member E1 [Source:HGNC Symbol;Acc:20803] |
Retrocopy-Parental alignment summary:
>retro_pvam_400
TCTCCGCGCTGCCATCGCACTGTACTTCCCATCATCAGTGGCATCCTGCTGGCCGCGGTCACACTTGTATTTTGACACGG
GAAGTGGGGAGCTGGTCAGAACTCTTGCTGGAACACTGTTTCTCACTTCAGAATAAATTCTCCAAAAAGGTATTGAGTGA
TTCAAAGCTCCGTGGCCTCCAGCCGCTGTACATCCAGGGCAGCCCCACCATCTTCTTTCAGATCTTTCTTGGGTTCTGGT
GGAACTTGTGGTTTTTCTTCTCGGCAAAAACTTGACCTGTGTTTCCCAGTGGCCCTGGAAGCTCCTGCTCTTCGCTGTCG
GGAGCTTCTGTAAGCTTTGCCCCAAATCTCATCATCTTCAGCTTTCTAAACCTGATCAGCTCTCCGAGCTACTCAGTCAC
CAATGTCACCAGG
ORF - retro_pvam_400 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 50.35 % |
| Parental protein coverage: | 51.5 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | STKVYLSLIPIISGV-LLATVTELSFDMWGL-ISALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCH |
| S........PIISG..L.A.........WG...S.L....CFSLQN.FSKKVL.DS....L..L.I.G.. | |
| Retrocopy | SPRCHRTVLPIISGILLAAVTLVF*HGKWGA<WSELLLEHCFSLQNKFSKKVLSDSKLRGLQPLYIQGSP |
| Parental | AVFFMI-PTWVLVDLSAFLVSSDLTYVYQWPWTLLLLAVSGFC-NFAQNVIAFSILNLISPLSYSVANAT |
| ..FF.I...WVLV.L..FL....LT.V.QWPW.LLL.AV..FC..FA.N.I.FS.LNLIS..SYSV.N.T | |
| Retrocopy | TIFFQI<LSWVLVELVVFLLGKNLTCVSQWPWKLLLFAVGSFC>SFAPNLIIFSFLNLISSPSYSVTNVT |
| Parental | K |
| . | |
| Retrocopy | R |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_400 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pteropus vampyrus | ENSPVAG00000004322 | 1 retrocopy |
retro_pvam_400 ,
|