RetrogeneDB ID: | retro_pvam_448 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3196:2274..3047(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEPT2 | ||
Ensembl ID: | ENSPVAG00000000558 | ||
Aliases: | None | ||
Description: | septin 2 [Source:HGNC Symbol;Acc:7729] |
Percent Identity: | 89.19 % |
Parental protein coverage: | 69.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EKIERTVQIEAST-VEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYVDEQFERYLHDESGLNRRHI |
EK.ERT.QI.AS..VEIEER.VKLRLTVVDTP.Y.DAINCR.CFKTIISY.DEQFERYLHDESGL.RRHI | |
Retrocopy | EKMERTAQI*ASM<VEIEERVVKLRLTVVDTPDYNDAINCRNCFKTIISYIDEQFERYLHDESGLTRRHI |
Parental | IDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIY |
.D.RVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKA.TLTLKERERLKKR.LDEIEEHNI.IY | |
Retrocopy | VDDRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAYTLTLKERERLKKRTLDEIEEHNISIY |
Parental | HLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI |
HLPDAESDED.DFKEQTRL.KASI.FSVVGSNQLIEAKGKKVRGRLYPWGV.EVENPEHNDFLKLRT.LI | |
Retrocopy | HLPDAESDEDKDFKEQTRLRKASISFSVVGSNQLIEAKGKKVRGRLYPWGVAEVENPEHNDFLKLRTTLI |
Parental | THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELR |
.H.QDL.EVTQDL..ENFRSERLKRGGRKVENEDMNKDQIL..KEAELR | |
Retrocopy | AHIQDLREVTQDLPDENFRSERLKRGGRKVENEDMNKDQILAGKEAELR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002608 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012960 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008715 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000006122 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000013687 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011964 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016519 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007108 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016041 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000166 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013873 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004457 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000558 | 1 retrocopy |
retro_pvam_448 ,
|
Rattus norvegicus | ENSRNOG00000017952 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013357 | 1 retrocopy | |
Drosophila melanogaster | FBgn0011710 | 1 retrocopy |