RetrogeneDB ID: | retro_pvam_549 | ||
Retrocopy location | Organism: | Megabat (Pteropus vampyrus) | |
| Coordinates: | GeneScaffold_3693:43085..43421(-) | ||
| Located in intron of: | ENSPVAG00000011223 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSPVAG00000024100 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_pvam_549
ATGGTGCCCTTGCTTGCCTTGTTTCTGGTGGCCCTGCCTCTGGCCCAGGCTCTGGACTTCCATGCATGCACCTACAACAG
GGAGAATTGCTTCAACCCCATGCACTGCCCGGCCATGGTCACCTACTGCATGACCACACATACTTACTATACCCCAACCA
AGATGAAGGTGAGCAAGTCCTGCGTGCCCAGCTGCTTTGAGACCGTGTATGATGGCTACTCCAAGCACGTGTCCACCACC
TCCTGCTGCCAGTACTACCTCTGTAACGATGCCGGCCTCGCCCCTTCGAGGACCCTGGCCCTGGCTCCCAAACTCCTGGC
CATGCTCTGGGGTCTG
ORF - retro_pvam_549 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 82.61 % |
| Parental protein coverage: | 99.14 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAPLLALFLVALPLAQALDCHVCSYNGENCFNPMRSMRCPAMVTYCMTTRTYYTPTKMKVSKSCMPSCFE |
| M.PLLALFLVALPLAQALD.H.C.YN.ENCFNP...M.CPAMVTYCMTT.TYYTPTKMKVSKSC.PSCFE | |
| Retrocopy | MVPLLALFLVALPLAQALDFHACTYNRENCFNP---MHCPAMVTYCMTTHTYYTPTKMKVSKSCVPSCFE |
| Parental | TVYDGYSKHASTTSCCQYDLCNGAGLATPGALALAPILLATLWGL |
| TVYDGYSKH.STTSCCQY.LCN.AGLA....LALAP.LLA.LWGL | |
| Retrocopy | TVYDGYSKHVSTTSCCQYYLCNDAGLAPSRTLALAPKLLAMLWGL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_549 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pteropus vampyrus | ENSPVAG00000024100 | 1 retrocopy |
retro_pvam_549 ,
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