RetrogeneDB ID: | retro_pvam_830 | ||
Retrocopy location | Organism: | Megabat (Pteropus vampyrus) | |
| Coordinates: | scaffold_128:233833..234186(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NUDT14 | ||
| Ensembl ID: | ENSPVAG00000013910 | ||
| Aliases: | None | ||
| Description: | nudix (nucleoside diphosphate linked moiety X)-type motif 14 [Source:HGNC Symbol;Acc:20141] |
Retrocopy-Parental alignment summary:
>retro_pvam_830
GCCTCACTTTACCTGAGGCTCTACTGGCCGAACTGCCAGAACTGCACCCAGACATTGTGGGACTTCATGAAGACACGTGG
CAGTGTGAGCATTCTCACGTTCAATGCTTGTCAGAGGTTCTTGATGTTGGTGGAGCCATTCTGGCCAACTGCGTATGCAG
GCGAGGTGAGATGCCACTTCCCAGAGTGCCTGGAAGCCAAGAACCAGGACAGAGCTGGGAGCTGCAGGTGGCACCGCCCA
GGCGGGTGAGGGTAACAGTCAAGCTTTACATGATCCTCATAGACCAGCTTGGGCTCTTACTGGAGGAAGTGGCCGGCAAG
GAGGTTCGAGAAGAGTGTGGCTACCACCTGGCC
ORF - retro_pvam_830 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.5 % |
| Parental protein coverage: | 53.6 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | ASPYLRPFTLHYRQNGTQKSWDFMKTHDSVTVLLFNSSQRSLVLVKQFRPAVYASEAERNFPGCLAALDQ |
| AS.YLR.......QN.TQ..WDFMKT..SV..L.FN..QR.L.LV..F.P..YA.E....FP.CL.A..Q | |
| Retrocopy | ASLYLRLYWPNC-QNCTQTLWDFMKTRGSVSILTFNACQRFLMLVEPFWPTAYAGEVRCHFPECLEAKNQ |
| Parental | DQPRLLPGALPGSAG-VTYELCAGLVDQPGLSLEEVACKEAREECGYDLA |
| D.........PG..G.VT..L...L.DQ.GL.LEEVA.KE.REECGY.LA | |
| Retrocopy | DRAGSCRWHRPGG*G<VTVKLYMILIDQLGLLLEEVAGKEVREECGYHLA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_830 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pteropus vampyrus | ENSPVAG00000013910 | 1 retrocopy |
retro_pvam_830 ,
|